| Protein: | PRP16 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1071 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP16.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1071] | [1..1071] |
|
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0.0 | [3..1049] | [79..1127] |
|
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0.0 | [4..1050] | [147..1225] |
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0.0 | [6..1056] | [187..1209] |
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0.0 | [134..1053] | [464..1430] |
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Region A: Residues: [1-300] |
1 11 21 31 41 51
| | | | | |
1 MGHSGREERI KDIFKELTSK ELTPGLLLTL QKLAQKPNTN LEQFIASCKA LTKLSSNNPI 60
61 IFNELLELLK NKSEEDSTGP KKIAPSINKR KKFKIQLDLD DNEDELDSPV QKKPAPTRTL 120
121 FKRIDKLKAK QLRQYSPTVK DPSPNSEQQT QNGHAETKDY EPTRSEVVEE DREWYDNDDD 180
181 YGNLVPEPLS ELPEEAKLLP VIRNIDNDDA LRNTVQLYPI PLKQRMEWIP PFLSKFALEN 240
241 KVPTSIIIGS ISETSSQVSA LSMVNPFRNP DSEFSANAKR GSKLVALRRI NMEHIQQSRD 300
301
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [301-747] |
1 11 21 31 41 51
| | | | | |
1 NTTVLNTAMG EVLGLENNNK AKDKSNQKIC DDTALFTPSK DDIKHTKEQL PVFRCRSQLL 60
61 SLIRENQVVV IIGETGSGKT TQLAQYLYEE GYANDRGKSI VVTQPRRVAA ISVAKRVAME 120
121 MQVPLGKEVG YSIRFEDVTD SECTKLKFVT DGILLRETLL DDTLDKYSCV IIDEAHERSL 180
181 NTDILLGFFK ILLARRRDLK LIITSATMNA KKFSAFFGNA PQFTIPGRTF PVQTIYTSNP 240
241 VQDYVEAAVS QAVKIHLAND CSSGDILIFM TGQEDIETTF DTLQEKFLQV YSKKFGTANF 300
301 EEINDIEILP IYSALPADLQ FKIFQDLHGT KRKIIIATNI AETSLTIKGI RYVIDCGYSK 360
361 LKVYNPKIGL DSLVITPISK ANADQRSGRA GRTAPGTAYR LYTEDTFKED MYLQTIPEIQ 420
421 RTNLSNTLLL LKSLDVTDEL SKFPFID
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [748-820] |
1 11 21 31 41 51
| | | | | |
1 KPPLQTFLSS LYELWFIGAI DTSGQLTPLG LQMAKFPLQP SLSKILLIAV RNGCSDEMLT 60
61 IVSMLSVPQV FYR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.797 | a.39.1 | EF-hand |
| View | Download | 0.761 | a.74.1 | Cyclin-like |
| View | Download | 0.868 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.649 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.619 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.587 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.530 | a.4.1 | Homeodomain-like |
| View | Download | 0.505 | d.216.1 | Rotavirus NSP2 fragment, N-terminal domain |
| View | Download | 0.503 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.492 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.477 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.477 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.474 | a.4.1 | Homeodomain-like |
| View | Download | 0.451 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.447 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.441 | a.39.1 | EF-hand |
| View | Download | 0.434 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.423 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.387 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.381 | a.65.1 | Annexin |
| View | Download | 0.374 | a.39.1 | EF-hand |
| View | Download | 0.365 | a.4.1 | Homeodomain-like |
| View | Download | 0.348 | a.77.1 | DEATH domain |
| View | Download | 0.348 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.345 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.345 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.335 | a.39.1 | EF-hand |
| View | Download | 0.320 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.314 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.313 | a.21.1 | HMG-box |
| View | Download | 0.312 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.302 | a.64.1 | Saposin |
| View | Download | 0.290 | a.21.1 | HMG-box |
| View | Download | 0.280 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.261 | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.249 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.249 | a.159.2 | FF domain |
| View | Download | 0.249 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.239 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.229 | d.66.1 | Alpha-L RNA-binding motif |
| View | Download | 0.222 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.218 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.206 | a.59.1 | PAH2 domain |
| View | Download | 0.206 | a.60.8 | HRDC-like |
| View | Download | 0.201 | d.52.5 | Probable GTPase Der, C-terminal domain |
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Region A: Residues: [821-1071] |
1 11 21 31 41 51
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1 PKERQKEADI ARNKFFIAKS DHLTLLNVFE QWRANNFSSH WCNKHFVQYK SLVRARDIRD 60
61 QLLTILKSQK IPVISSGKDW DIIKKCICSG FAHQAAKITG LRNYVHLKTG VSVQLHPTSA 120
121 LHGLGDLPPY VVYHELLMTS KEYICCVTSV DPFWLMEYGG LLYDIKRIKN DQEATTTGLF 180
181 GEHYEHTLDK VEDDIDINIR RCKDMRDSVI QELKMTDNSN KEDKKQKTKK QNILNGKENS 240
241 MKPFKRRKPF F
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [899-1071] |
1 11 21 31 41 51
| | | | | |
1 DWDIIKKCIC SGFAHQAAKI TGLRNYVHLK TGVSVQLHPT SALHGLGDLP PYVVYHELLM 60
61 TSKEYICCVT SVDPFWLMEY GGLLYDIKRI KNDQEATTTG LFGEHYEHTL DKVEDDIDIN 120
121 IRRCKDMRDS VIQELKMTDN SNKEDKKQKT KKQNILNGKE NSMKPFKRRK PFF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
