| Protein: | PRP16 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1071 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP16.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1071] | [1..1071] |
|
|
0.0 | [3..1049] | [79..1127] |
|
|
0.0 | [4..1050] | [147..1225] |
|
|
0.0 | [6..1056] | [187..1209] |
|
|
0.0 | [134..1053] | [464..1430] |
|
Region A: Residues: [1-300] |
1 11 21 31 41 51
| | | | | |
1 MGHSGREERI KDIFKELTSK ELTPGLLLTL QKLAQKPNTN LEQFIASCKA LTKLSSNNPI 60
61 IFNELLELLK NKSEEDSTGP KKIAPSINKR KKFKIQLDLD DNEDELDSPV QKKPAPTRTL 120
121 FKRIDKLKAK QLRQYSPTVK DPSPNSEQQT QNGHAETKDY EPTRSEVVEE DREWYDNDDD 180
181 YGNLVPEPLS ELPEEAKLLP VIRNIDNDDA LRNTVQLYPI PLKQRMEWIP PFLSKFALEN 240
241 KVPTSIIIGS ISETSSQVSA LSMVNPFRNP DSEFSANAKR GSKLVALRRI NMEHIQQSRD 300
301
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [301-747] |
1 11 21 31 41 51
| | | | | |
1 NTTVLNTAMG EVLGLENNNK AKDKSNQKIC DDTALFTPSK DDIKHTKEQL PVFRCRSQLL 60
61 SLIRENQVVV IIGETGSGKT TQLAQYLYEE GYANDRGKSI VVTQPRRVAA ISVAKRVAME 120
121 MQVPLGKEVG YSIRFEDVTD SECTKLKFVT DGILLRETLL DDTLDKYSCV IIDEAHERSL 180
181 NTDILLGFFK ILLARRRDLK LIITSATMNA KKFSAFFGNA PQFTIPGRTF PVQTIYTSNP 240
241 VQDYVEAAVS QAVKIHLAND CSSGDILIFM TGQEDIETTF DTLQEKFLQV YSKKFGTANF 300
301 EEINDIEILP IYSALPADLQ FKIFQDLHGT KRKIIIATNI AETSLTIKGI RYVIDCGYSK 360
361 LKVYNPKIGL DSLVITPISK ANADQRSGRA GRTAPGTAYR LYTEDTFKED MYLQTIPEIQ 420
421 RTNLSNTLLL LKSLDVTDEL SKFPFID
|
| Detection Method: | |
| Confidence: | 62.69897 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [748-820] |
1 11 21 31 41 51
| | | | | |
1 KPPLQTFLSS LYELWFIGAI DTSGQLTPLG LQMAKFPLQP SLSKILLIAV RNGCSDEMLT 60
61 IVSMLSVPQV FYR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.868 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
|
Region A: Residues: [821-1071] |
1 11 21 31 41 51
| | | | | |
1 PKERQKEADI ARNKFFIAKS DHLTLLNVFE QWRANNFSSH WCNKHFVQYK SLVRARDIRD 60
61 QLLTILKSQK IPVISSGKDW DIIKKCICSG FAHQAAKITG LRNYVHLKTG VSVQLHPTSA 120
121 LHGLGDLPPY VVYHELLMTS KEYICCVTSV DPFWLMEYGG LLYDIKRIKN DQEATTTGLF 180
181 GEHYEHTLDK VEDDIDINIR RCKDMRDSVI QELKMTDNSN KEDKKQKTKK QNILNGKENS 240
241 MKPFKRRKPF F
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [899-1071] |
1 11 21 31 41 51
| | | | | |
1 DWDIIKKCIC SGFAHQAAKI TGLRNYVHLK TGVSVQLHPT SALHGLGDLP PYVVYHELLM 60
61 TSKEYICCVT SVDPFWLMEY GGLLYDIKRI KNDQEATTTG LFGEHYEHTL DKVEDDIDIN 120
121 IRRCKDMRDS VIQELKMTDN SNKEDKKQKT KKQNILNGKE NSMKPFKRRK PFF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
