| Protein: | LAS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 502 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..502] | [1..502] |
|
|
1.0E-72 | [5..228] | [4..220] |
|
|
1.0E-52 | [6..200] | [41..219] |
|
|
8.0E-51 | [5..166] | [29..186] |
|
|
2.0E-48 | [32..177] | [98..279] |
|
|
1.0E-47 | [6..160] | [59..202] |
|
Region A: Residues: [1-23] |
1 11 21 31 41 51
| | | | | |
1 MIPPRIVPWR DFAELEELKL WFY
|
|
Region B: Residues: [43-53] |
1 11 21 31 41 51
| | | | | |
1 SYRLKGSQYL P
|
|
Region C: Residues: [177-361] |
1 11 21 31 41 51
| | | | | |
1 DTGYGYRRND KLEKYMESLT KTLDKWKRLR NEFLEYKWVW ENANDSLITS SNFSGDNLVN 60
61 YDAEKRKSSH ASSSETMIRE NLRQWQELWK LSIYHNVVLE KFFNNYDPLL LKVLMLNLNN 120
121 FDWKVIEWVA RNYRTQQDDS NITTILKRKF NAWKELQKRL LDVIINNLNN KNFKNKWQNW 180
181 EKLID
|
| Detection Method: |  |
| Confidence: | 7.18 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [24-42] |
1 11 21 31 41 51
| | | | | |
1 PKSKGTIEDK RQRAVQRVQ
|
|
Region B: Residues: [54-176] |
1 11 21 31 41 51
| | | | | |
1 HVVDSTAQIT CAVLLDEKEA CLGVHQDSIP IRLSYVMALI RFVNGLLDPT QQSQFAIPLH 60
61 TLAAKIGLPS WFVDLRHWGT HERDLPGLEM LRWAANEALS WLYDHYWNDE ELEDDRDDDD 120
121 DDD
|
| Detection Method: | |
| Confidence: | 7.18 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [362-502] |
1 11 21 31 41 51
| | | | | |
1 ENASYLILYF CQSMLAKLET EKITGNSWRN KKRRKQIDST VEIEAKLKEN IDNLSLRFNE 60
61 GEIKLYDFIP AEKDSVPLKK EVSPALKADT NDILGDLASL KQRMSSFGTV GKKNKQEENR 120
121 ATPVKNWSRV QNWKPKPFGV L
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.495 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.572 | a.25.1 | Ferritin-like |
| View | Download | 0.480 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.480 | a.24.3 | Cytochromes |
| View | Download | 0.572 | a.25.1 | Ferritin-like |
| View | Download | 0.542 | a.25.1 | Ferritin-like |
| View | Download | 0.495 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.480 | a.24.3 | Cytochromes |
| View | Download | 0.480 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.383 | d.110.4 | SNARE-like |
| View | Download | 0.382 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.362 | d.224.1 | SufE-like |
| View | Download | 0.355 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.352 | a.118.1 | ARM repeat |
| View | Download | 0.346 | a.126.1 | Serum albumin-like |
| View | Download | 0.318 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.312 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.312 | d.110.4 | SNARE-like |
| View | Download | 0.312 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.291 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.271 | a.47.2 | t-snare proteins |
| View | Download | 0.267 | a.118.8 | TPR-like |
| View | Download | 0.267 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.262 | a.126.1 | Serum albumin-like |
| View | Download | 0.259 | a.24.3 | Cytochromes |
| View | Download | 0.256 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.255 | a.4.1 | Homeodomain-like |
| View | Download | 0.247 | a.118.8 | TPR-like |
| View | Download | 0.246 | d.123.1 | Sporulation responce regulatory protein Spo0B |
| View | Download | 0.245 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.225 | d.95.2 | Homing endonucleases |
| View | Download | 0.215 | a.118.8 | TPR-like |
| View | Download | 0.208 | b.97.1 | Anemone pore-forming cytolysin |
| View | Download | 0.203 | d.24.1 | Pili subunits |
