| Protein: | FRE2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 711 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRE2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..711] | [1..711] |
|
|
0.0 | [72..709] | [199..938] |
|
|
0.0 | [72..709] | [207..921] |
|
|
0.0 | [71..709] | [229..962] |
|
|
0.0 | [72..709] | [207..921] |
|
Region A: Residues: [1-218] |
1 11 21 31 41 51
| | | | | |
1 MHWTSILSAI LLFCLSGARA SPAKTVIRNK VPLLVTNACT RIFQKVTWEY TSKSKRSSPV 60
61 CSYEPAFQSM LYCIYETLDE KGYSNKTLEK TFSTIKKNCA SYSDALQNMT NSEFYDVLNN 120
121 GTRHMTPYVK GSANLTYPVE MDTQLRKAYY HALHGFYANL DVGNIYGGII CAYFVAIMAF 180
181 AGVLHCMNYT PFKTVLLKQK LVGYVRGYLT LPTIGSKH
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [219-344] |
1 11 21 31 41 51
| | | | | |
1 ASDFSYFRIF TGYLPTRLEG IIILGYLVLH TVFLAYGYEY DPENIIFKSR RVQVARYVAD 60
61 RSGVLAFAHF PLIVLFAGRN NFLEYISGVK YTSFIMFHKW LGRMMFLDAM IHGSAYTSYT 120
121 VANKTW
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [345-405] |
1 11 21 31 41 51
| | | | | |
1 ATSKNRLYWQ FGVAALCLAG TMVFFSFAVF RKYFYEAFLF LHIVLGAMFF YACWEHVVSL 60
61 S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.465 | a.4.1 | Homeodomain-like |
| View | Download | 0.727 | a.65.1 | Annexin |
| View | Download | 0.480 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.469 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.523 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.916 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.869 | a.7.1 | Spectrin repeat |
| View | Download | 0.853 | a.19.1 | Fertilization protein |
| View | Download | 0.833 | a.47.2 | t-snare proteins |
| View | Download | 0.832 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.402 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.401 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.400 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.379 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.360 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.349 | a.118.8 | TPR-like |
| View | Download | 0.331 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.328 | a.4.1 | Homeodomain-like |
| View | Download | 0.313 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.313 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.295 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.293 | a.112.1 | Description not found. |
| View | Download | 0.290 | a.4.1 | Homeodomain-like |
| View | Download | 0.282 | a.2.7 | tRNA-binding arm |
| View | Download | 0.279 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.277 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.271 | a.17.1 | p8-MTCP1 |
| View | Download | 0.270 | a.4.1 | Homeodomain-like |
| View | Download | 0.266 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.264 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.264 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.263 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.252 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.249 | a.64.1 | Saposin |
| View | Download | 0.249 | a.101.1 | Uteroglobin-like |
| View | Download | 0.246 | a.4.1 | Homeodomain-like |
| View | Download | 0.246 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.245 | g.59.1 | Zinc-binding domain of translation initiation factor 2 beta |
| View | Download | 0.244 | a.112.1 | Description not found. |
| View | Download | 0.242 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.233 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.232 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.230 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.225 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.219 | a.126.1 | Serum albumin-like |
| View | Download | 0.214 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.214 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.213 | a.4.1 | Homeodomain-like |
| View | Download | 0.213 | a.4.1 | Homeodomain-like |
| View | Download | 0.211 | a.4.1 | Homeodomain-like |
| View | Download | 0.209 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.204 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.203 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.203 | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.201 | a.60.2 | RuvA domain 2-like |
|
Region A: Residues: [406-528] |
1 11 21 31 41 51
| | | | | |
1 GIEWIYTAIA IWIVDRIIRI IKASYFGFPK ASLQLIGDDL IRLTVKKPAR PWRAKPGQYV 60
61 FVSFLHPLYF WQSHPFTVLD SVSKNGELVI ILKEKKGVTR LVKKYVCRNG GKTSMRLAIE 120
121 GPY
|
| Detection Method: | |
| Confidence: | 53.0 |
| Match: | 1cnf__ |
| Description: | Nitrate reductase core domain; Nitrate reductase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.45374095556065 | bayes_pls_golite062009 |
| transferase activity | 1.15480450573972 | bayes_pls_golite062009 |
| binding | 1.13408475648113 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.27336340260908 | bayes_pls_golite062009 |
| protein binding | 0.144900113694048 | bayes_pls_golite062009 |
| cofactor binding | 0.0731141170494622 | bayes_pls_golite062009 |
|
Region A: Residues: [529-711] |
1 11 21 31 41 51
| | | | | |
1 GSSSPVNNYN NVLLLTGGTG LPGPIAHAIK LGKTSAAAGK QSVKLVIAVR GFDVLEAYKP 60
61 ELMCLENLNV QLHIYNTMEV PSLTPSDSLD ISQQDEKADE KGTVVATTLE KSANPLGFDG 120
121 VVFHCGRPNV KELLHEAAEL SGSLSVVCCG PPIFVDKVRN ETAKIVLDKS AKAIEYFEEY 180
181 QCW
|
| Detection Method: | |
| Confidence: | 53.0 |
| Match: | 1cnf__ |
| Description: | Nitrate reductase core domain; Nitrate reductase |
| Matching Structure (courtesy of the PDB): |
|
