| Protein: | LOS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1100 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1100] | [1..1100] |
|
|
0.0 | [14..1087] | [10..952] |
|
|
0.0 | [2..1099] | [3..976] |
|
|
0.0 | [17..843] | [13..757] |
|
|
2.0E-81 | [3..871] | [24..786] |
|
Region A: Residues: [1-434] |
1 11 21 31 41 51
| | | | | |
1 MLERIQQLVN AVNDPRSDVA TKRQAIELLN GIKSSENALE IFISLVINEN SNDLLKFYGL 60
61 STLIELMTEG VNANPNGLNL VKFEITKWLK FQVLGNKQTK LPDFLMNKIS EVLTTLFMLM 120
121 YSDCNGNQWN SFFDDLMSLF QVDSAISNTS PSTDGNILLG LEFFNKLCLM INSEIADQSF 180
181 IRSKESQLKN NNIKDWMRDN DIMKLSNVWF QCLKLDEQIV SQCPGLINST LDCIGSFISW 240
241 IDINLIIDAN NYYLQLIYKF LNLKETKISC YNCILAIISK KMKPMDKLAF LNMINLTNEL 300
301 TYYHQAISMN PQIITFDNLE VWESLTKLIT SFGIEFTIII EQVNDDQKLD TLYKQSVISN 360
361 VDSILLEKII PILLEFMNNE FDSITAKTFP FWSNYLAFLK KYKASSPNFV PLHKDFLDNF 420
421 QQICFKRMKF SDDE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [435-516] |
1 11 21 31 41 51
| | | | | |
1 VTQDDFEEFN ETVRFKLKNF QEIIVVIDPS LFLNNISQEI SANLMNCKNE SWQIFELTIY 60
61 QIFNLSECTK NNYFGLNKNE IM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.917 | 0.008 | tRNA splicing, via endonucleolytic cleavage and ligation | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
|
Region A: Residues: [517-1100] |
1 11 21 31 41 51
| | | | | |
1 TSQPSLTLVR FLNELLMMKD FLLAIDNEQI QILFMELIVK NYNFIFSTSA NTANATDDDE 60
61 KYLLILNIFM SSFAMFNKRE NVRLRSWYLF TRFLKLTRIN LKKILFANKN LVNEITNKIS 120
121 PLLHIKVTSI NAQGTDDNDT IFDNQLYIFE GIGFIITLNN SSQELTAATA NTPIDYDILD 180
181 QILTPLFTQL EGCITQGASP VVILECHHIL MAIGTLARGL HIGLVPENQV NNMVVNKKLI 240
241 NDSLIHKFSN IAEVILVTFS FFNKFENIRD ASRFTFARLI PILSNKILPF INKLIELILS 300
301 STDLKSWEMI DFLGFLSQLI HMFHTDTDCY QLFNQLLTPL INKVHSIIEE IDEQHDQQSS 360
361 SNKPIDTAVT ATSVNKNIVV TDSYRDKILL KKAYCTFLQS FTNNSVTSIL LSDINRAILP 420
421 VILNDLVTYT PQEIQETSMM KVSLNVLCNF IKCFGNGTCL DNDDINKDPN LKIDGLNEYF 480
481 IMKCVPIIFE IPFNPIYKFN IKEGNFKTMA YDLARLLREL FIVSSNPTTN ENECVKYLTQ 540
541 IYLPQIQLPQ ELTIQLVNML TTMGQKQFEK WFVDNFISVL KQGQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1013-1100] |
1 11 21 31 41 51
| | | | | |
1 YKFNIKEGNF KTMAYDLARL LRELFIVSSN PTTNENECVK YLTQIYLPQI QLPQELTIQL 60
61 VNMLTTMGQK QFEKWFVDNF ISVLKQGQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
