YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: LST4
Organism: Saccharomyces cerevisiae
Length: 828 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LST4.

Description E-value Query
Range
Subject
Range
gi|407504, gi|15... - gi|407504|emb|CAA81509.1| unknown [Saccharomyces cerevisiae], gi|1582527|prf||2118403A ORF
652.0 [0..1] [306..1]
LST4_CANGA - Protein LST4 OS=Candida glabrata GN=LST4 PE=3 SV=1
LST4_CANGA - Protein LST4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=...
444.0 [0..72] [824..8]
LST4_ASHGO - Protein LST4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LST4 P...
LST4_ASHGO - Protein LST4 OS=Ashbya gossypii GN=LST4 PE=3 SV=1
375.0 [0..60] [802..28]
LST4_KLULA - Protein LST4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1...
LST4_KLULA - Protein LST4 OS=Kluyveromyces lactis GN=LST4 PE=3 SV=1
361.0 [0..74] [803..35]
orf19.871 - orf19.871 CGDID:CAL0002848 Assembly 19, Contig19-10076 (179308, 176249) CDS, reverse complemented, t...
gi|46442889, gi|... - gi|68469968|ref|XP_720994.1| hypothetical protein CaO19.871 [Candida albicans SC5314], gi|46442889|g...
58.0 [0..147] [505..173]
gi|50424359, gi|... - gi|50424359|ref|XP_460766.1| hypothetical protein DEHA0F10241g [Debaryomyces hansenii CBS767], gi|49...
49.0 [0..503] [733..750]

Back

Predicted Domain #1
Region A:
Residues: [1-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGNLLRNKT SSSGFEKSSE HSDFSSVVPN VPVYCKAAST GTTKTAAGAL LDTAVNVEKP  60
   61 SEMLSTTSPP ILDHISDDLK LKLFGSRDIP YSRPIDTLQN NGGLGTDKIT SINEKTYAFR 120
  121 ILIIEEAGQM ACRNNYRDIF DYTTSKISNS MEQIRPSELK EYIFGSPVRS SDLTQCDKIR 180
  181 TIPNSDLVLI TRIFYYTHQY NRIAISLCIP RILLPVVAES WSSISSWLTQ TQKMLIGFLT 240
  241 KNRIMQENTG NYSNNSVIKL SNIDIRTHYP KEIEIMVQTL QKRVIPGLRS MSEIPRLFLY 300
  301 PETFKEFVHV WFKSIFNWIE IK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [323-513]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGPKLGFLPL LMAMIISDYR HTIRELKTSK IVILSGNMVV ANKLLFILSA LLEPKYKGQI  60
   61 TIRRENIRSD SSAVSRNKSN NNFVDKPETE LSTLTSTDNL LSRTENNSNH NYNNSNVSSN 120
  121 SIGSPNFHSL RKGWQIPNRR NSNTSVSVSS SESLAEVIQP SSFKSGSSSL HYLSSSISSQ 180
  181 PGSYGSWFNK R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [514-828]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTISQFFQPS PSLKHNESWE RLQTTAGNMQ RTSSSSSLQQ ATSRLSLTTP QQSPSISEYD  60
   61 EYPWMGTPGS PNVGDVSHAP PLVKNISYKF PLKNVELKRD CQRISQDDLL DEAFERICQP 120
  121 SLADLNSTYE IFPGNSSYAD ILTTDSDIDD GLMNKPLELL PKYTMYLTHF NNFFQLQACP 180
  181 AGQESESRIT NSMKIDLLKA DYTRSLLVSL RSRDIRDVAL KREFTGNNNN NSNQNIYDEN 240
  241 FVGKRKYVLK QKTRKIFSCG KIGKLSTSLE NCVNFVENSI KSAMMLYDDN GIDSELRDSE 300
  301 ALRIFSSLVH YCNAG

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.03
Match:
Description: No description for 1f1kA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle