| Protein: | OCT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 770 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OCT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..770] | [1..772] |
|
|
0.0 | [80..757] | [3..677] |
|
|
0.0 | [80..757] | [3..677] |
|
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0.0 | [80..757] | [3..677] |
|
|
0.0 | [80..757] | [3..677] |
|
|
0.0 | [66..760] | [3..680] |
|
|
0.0 | [80..757] | [3..677] |
|
|
0.0 | [80..757] | [3..677] |
|
|
0.0 | [77..757] | [11..677] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MLRTIILKAG SNASIPSPSR QNKLLRFFAT AGAVSRTSPG SIKKIFDDNS YWRNINGQDA 60
61 NNSKISQYLF KKNKTGLFKN PYLT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.333 | d.58.17 | Metal-binding domain |
| View | Download | 0.326 | a.77.1 | DEATH domain |
| View | Download | 0.361 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.361 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.333 | d.58.17 | Metal-binding domain |
| View | Download | 0.331 | d.58.17 | Metal-binding domain |
| View | Download | 0.328 | a.159.2 | FF domain |
| View | Download | 0.328 | a.159.2 | FF domain |
| View | Download | 0.326 | a.77.1 | DEATH domain |
| View | Download | 0.309 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.301 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.298 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.285 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.271 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.265 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.253 | a.4.1 | Homeodomain-like |
| View | Download | 0.249 | d.15.1 | Ubiquitin-like |
| View | Download | 0.234 | d.201.1 | SRP19 |
| View | Download | 0.233 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.229 | a.24.3 | Cytochromes |
| View | Download | 0.227 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.226 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | d.15.4 | 2Fe-2S ferredoxin-like |
| View | Download | 0.223 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.222 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.221 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.218 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.217 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.205 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.205 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.203 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.202 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.202 | a.36.1 | Signal peptide-binding domain |
|
Region A: Residues: [85-412] |
1 11 21 31 41 51
| | | | | |
1 SPDGLRKFSQ VSLQQAQELL DKMRNDFSES GKLTYIMNLD RLSDTLCRVI DLCEFIRSTH 60
61 PDDAFVRAAQ DCHEQMFEFM NVLNTDVSLC NILKSVLNNP EVSSKLSAEE LKVGKILLDD 120
121 FEKSGIYMNP DVREKFIQLS QEISLVGQEF INHTDYPGSN SVKIPCKDLD NSKVSTFLLK 180
181 QLNKDVKGQN YKVPTFGYAA YALLKSCENE MVRKKLWTAL HSCSDKQVKR LSHLIKLRAI 240
241 LANLMHKTSY AEYQLEGKWQ DRRCQDFILT LMNNTIEKTA NELKFIAELK AKDLKKPLTT 300
301 NTDEILKLVR PWDRDYYTGK YFQLNPSN
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|
Region B: Residues: [628-698] |
1 11 21 31 41 51
| | | | | |
1 FLQNCETYSQ AKMAMLDQSF HDEKIISDID NFDVVENYQA LERRLKVLVD DQSNWCGRFG 60
61 HLFGSGQLIT A
|
| Detection Method: | |
| Confidence: | 1300.0 |
| Match: | 1i1iP_ |
| Description: | Neurolysin (endopeptidase 24.16) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [413-627] |
1 11 21 31 41 51
| | | | | |
1 SPNAKEISYY FTLGNVIQGL SDLFQQIYGI RLEPAITDEG ETWSPDVRRL NVISEEEGII 60
61 GIIYCDLFER NGKTSNPAHF TVCCSRQIYP SETDFSTIQV GENPDGTYFQ LPVISLVCNF 120
121 SPILIASKKS LCFLQLSEVE TLFHEMGHAM HSMLGRTHMQ NISGTRCATD FVELPSILME 180
181 HFAKDIRILT KIGKHYGTGE TIQADMLQRF MKSTN
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|
Region B: Residues: [699-770] |
1 11 21 31 41 51
| | | | | |
1 TYFDRTIASK IWYALFEDDP YSRKNGDKFK KHLLKWGGLK DPWKCIADVL ECPMLEKGGS 60
61 DAMEFIAQSH KS
|
| Detection Method: | |
| Confidence: | 1300.0 |
| Match: | 1i1iP_ |
| Description: | Neurolysin (endopeptidase 24.16) |
| Matching Structure (courtesy of the PDB): |
|
