YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP11
Organism:	Saccharomyces cerevisiae
Length:	256 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP11.

Description	E-value	Query Range	Subject Range
UTP11_MOUSE - Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1	2.0E-55	[9..239]	[12..240]
UTP11L - UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	9.0E-55	[8..239]	[11..240]
UTP11_RAT - Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1	9.0E-55	[8..239]	[11..240]
SPAC18G6.06 - U3 snoRNP-associated protein Utp11 UTP11_SCHPO - Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATC...	1.0E-49	[2..234]	[3..233]
CE01493 - status:Confirmed UniProt:Q09462 protein_id:CAA86740.1	2.0E-49	[1..239]	[1..244]
UTP11_ARATH - Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1	1.0E-47	[1..237]	[1..210]
CG1789-PA - This gene is referred to in FlyBase by the symbol Dmel\CG1789 (CG1789, FBgn0030063). It is a protein... gi\|220953782, gi... - gi\|220953782\|gb\|ACL89434.1\| CG1789-PA [synthetic construct], gi\|220943906\|gb\|ACL84496.1\| CG1789-PA [...	1.0E-40	[1..224]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLVHDVQK KQHRERSQLT SRSRYGFLEK HKDYVKRAQD FHRKQSTLKV LREKAKERNP  60
   61 DEYYHAMHSR KTDAKGLLIS SRHGDEEDES LSMDQVKLLK TQDSNYVRTL RQIELKKLEK 120
  121 GAKQLMFKSS GNHTIFVDSR EKMNEFTPEK FFNTTSEMVN RSENRLTKDQ LAQDISNNRN 180
  181 ASSIMPKESL DKKKLKKFKQ VKQHLQRETQ LKQVQQRMDA QRELLKKGSK KKIVDSQEKF 240
  241 HLNGRNNGNV RFLPSI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	1.82
Match:	1c1gB
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits