| Protein: | MSN4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 630 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSN4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [18..630] | [208..793] |
|
|
0.0 | [30..630] | [243..848] |
|
|
0.0 | [121..628] | [144..648] |
|
Region A: Residues: [1-212] |
1 11 21 31 41 51
| | | | | |
1 MLVFGPNSSF VRHANKKQED SSIMNEPNGL MDPVLSTTNV SATSSNDNSA NNSISSPEYT 60
61 FGQFSMDSPH RTDATNTPIL TATTNTTANN SLMNLKDTAS LATNWKWKNS NNAQFVNDGE 120
121 KQSSNANGKK NGGDKIYSSV ATPQALNDEL KNLEQLEKVF SPMNPINDSH FNENIELSPH 180
181 QHATSPKTNL LEAEPSIYSN LFLDARLPNN AN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [213-349] |
1 11 21 31 41 51
| | | | | |
1 STTGLNDNDY NLDDTNNDNT NSMQSILEDF VSSEEALKFM PDAGRDARRY SEVVTSSFPS 60
61 MTDSRNSISH SIEFWNLNHK NSSNSKPTQQ IIPEGTATTE RRGSTISPTT TINNSNPNFK 120
121 LLDHDVSQAL SGYSMDF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.252 | 0.232 | cytoplasm | a.1.1 | Globin-like |
| View | Download | 0.268 | 0.030 | nucleus | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.353 | 0.020 | cytoplasm | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.271 | 0.015 | cytoplasm | a.47.2 | t-snare proteins |
|
Region A: Residues: [350-460] |
1 11 21 31 41 51
| | | | | |
1 SKDSGITKPK SISSSLNRIS HSSSTTRQQR ASLPLIHDIE SFANDSVMAN PLSDSASFLS 60
61 EENEDDAFGA LNYNSLDATT MSAFDNNVDP FNILKSSPAQ DQQFIKPSMM L
|
| Detection Method: | |
| Confidence: | 32.218487 |
| Match: | 1tf3A_ |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [461-557] |
1 11 21 31 41 51
| | | | | |
1 SDNASAAAKL ATSGVDNITP TPAFQRRSYD ISMNSSFKIL PTSQAHHAAQ HHQQQPTKQA 60
61 TVSPNTRRRK SSSVTLSPTI SHNNNNGKVP VQPRKRK
|
| Detection Method: | |
| Confidence: | 128.09691 |
| Match: | 1zaaC_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [558-630] |
1 11 21 31 41 51
| | | | | |
1 SITTIDPNNY DKNKPFKCKD CEKAFRRSEH LKRHIRSVHS TERPFACMFC EKKFSRSDNL 60
61 SQHLKTHKKH GDF
|
| Detection Method: | |
| Confidence: | 130.30103 |
| Match: | 1a1fA_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
