| Protein: | RGT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1170 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1170] | [1..1170] |
|
|
8.0E-59 | [3..505] | [599..1091] |
|
|
3.0E-51 | [7..509] | [1040..1598] |
|
|
1.0E-46 | [4..370] | [81..429] |
|
|
2.0E-43 | [5..351] | [6..314] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MNELNTVSTN SSDSTKNGGT SNSPDDMDSA AAASHAIKKR TKASRACDQC RKKKIKCDYK 60
61 DEKGVCSNCQ RNGDRCSFDR VPLKRGPSKG YTRSTSHPRT NEIQDHNNSR SYNTFDNSNN 120
121
|
| Detection Method: |  |
| Confidence: | 10.0 |
| Match: | 1hwtC_ |
| Description: | Hap1 (Cyp1); HAP1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 3.86871420827942 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [121-470] |
1 11 21 31 41 51
| | | | | |
1 TLNNNTGNSG DNGINSNTVP STPSRSNSVL LPPLTQYIPQ AGGIPPSFQN PAIQSTMPAG 60
61 NIGQQQFWKV PYHEFQHQRK GSIDSLQSDI SVRTLNPNEQ LSYNTVQQSP ITNKHTNDSG 120
121 NANGSVTGSG SASGSGGYWS FIRTSGLLAP TDDHNGEQTR RSSSIPSLLR NTSNSLLLGG 180
181 QPQLPPPQQQ SQPQAHQQKL QQGQNLYSYS QFSQQQPYNP SISSFGQFAA NGFHSRQGSV 240
241 ASEAMSPSAP AMFTSTSTNP VNVAQQTQRP QGQQVPQFSS ELDGNKRRQS APVSVTLSTD 300
301 RLNGNENNNG EINNNNGSNN SGSSKDTSQH SQESVTTPAA LEASSPGSTP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [471-1170] |
1 11 21 31 41 51
| | | | | |
1 QRSTKKRRKS YVSKKTKPKR DSSISITSKD SAHPMTTSST IAYGQISDVD LIDTYYEFIH 60
61 VGFPIIPLNK TTLTSDLLLV NTQPISNIHE VNSYVILWFR NSLELLVRVA LKQKPGGKFF 120
121 DNIVGVALSP SNDNNKAGFT TATARDDAEK TRRDSHNEVQ DTLEVQSVFI AALNECFQKI 180
181 VDIHPKFREN NDQISPKIKV IYLSTFILLN YILAFVGYDN SFVLGMSVTI FNEFKLYKLL 240
241 LFPEPDINDV KPPVDEEVST GNGNTKTSEF EIGSESAGHM NPSNSPNSMD ENISHYSVLF 300
301 KRLYVLLSVF DSLQSCAFGG PKLLNISIQG STERFFSNDL GSKWCLEQSQ LRLKSVLQSL 360
361 KLGELMSELT RNRISMNGNR KPGFDITNSS SLLSEYVETQ PLSVAQLFCK LLIGKHNFIN 420
421 CLLSLYDSEA GVYSDLTLDL SSKIADSLCS LISIILQVLT LILRLNPTNS IDFNYRPPNP 480
481 PANNPTVQEG PSAMGSSPVA GNLSAAPPSE GNPDFYKKLL GLKQDTGTIL SDLCRGIISP 540
541 FAIAILHEVY NITELVKQMP TSLISIMMTA TTTQNTQDTK KSQDLVMKLS NSMNEVVQIT 600
601 SVLTMIKPFK IFEHELNKPI MSLTGGLSST TRNDVMWPKS GQGLRESSVM KTLLDERRTS 660
661 GTQPTTAPVA AEEPRLENVA LENFVSIGWK LLDDSELGWY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [458-602] |
1 11 21 31 41 51
| | | | | |
1 PAALEASSPG STPQRSTKKR RKSYVSKKTK PKRDSSISIT SKDSAHPMTT SSTIAYGQIS 60
61 DVDLIDTYYE FIHVGFPIIP LNKTTLTSDL LLVNTQPISN IHEVNSYVIL WFRNSLELLV 120
121 RVALKQKPGG KFFDNIVGVA LSPSN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [603-722] |
1 11 21 31 41 51
| | | | | |
1 DNNKAGFTTA TARDDAEKTR RDSHNEVQDT LEVQSVFIAA LNECFQKIVD IHPKFRENND 60
61 QISPKIKVIY LSTFILLNYI LAFVGYDNSF VLGMSVTIFN EFKLYKLLLF PEPDINDVKP 120
121
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [723-976] |
1 11 21 31 41 51
| | | | | |
1 PVDEEVSTGN GNTKTSEFEI GSESAGHMNP SNSPNSMDEN ISHYSVLFKR LYVLLSVFDS 60
61 LQSCAFGGPK LLNISIQGST ERFFSNDLGS KWCLEQSQLR LKSVLQSLKL GELMSELTRN 120
121 RISMNGNRKP GFDITNSSSL LSEYVETQPL SVAQLFCKLL IGKHNFINCL LSLYDSEAGV 180
181 YSDLTLDLSS KIADSLCSLI SIILQVLTLI LRLNPTNSID FNYRPPNPPA NNPTVQEGPS 240
241 AMGSSPVAGN LSAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [977-1170] |
1 11 21 31 41 51
| | | | | |
1 PPSEGNPDFY KKLLGLKQDT GTILSDLCRG IISPFAIAIL HEVYNITELV KQMPTSLISI 60
61 MMTATTTQNT QDTKKSQDLV MKLSNSMNEV VQITSVLTMI KPFKIFEHEL NKPIMSLTGG 120
121 LSSTTRNDVM WPKSGQGLRE SSVMKTLLDE RRTSGTQPTT APVAAEEPRL ENVALENFVS 180
181 IGWKLLDDSE LGWY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
