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View Structure Prediction Details

Protein: CYC1
Organism: Saccharomyces cerevisiae
Length: 109 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC1.

Description E-value Query
Range		 Subject
Range
CYC_SCHGR - (P00040) Cytochrome c
 2.0E-43 [5..109] [3..107]
CYC_FAGES - Cytochrome c OS=Fagopyrum esculentum PE=1 SV=1
 5.0E-43 [2..105] [4..107]
CYC2_MOUSE - Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3
 3.0E-42 [7..108] [2..103]
CYC_SARPE - (P12831) Cytochrome c
 3.0E-42 [5..109] [3..107]
CYC_MANSE - Cytochrome c OS=Manduca sexta PE=1 SV=2
 3.0E-42 [5..109] [4..108]
CYC2_RAT - Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2
 4.0E-42 [7..108] [2..103]
CYC_HIPAM - (P00007) Cytochrome c
 6.0E-42 [7..108] [1..102]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
 7.0E-42 [5..109] [3..107]
CYC_CANFA - (P00011) Cytochrome c
 7.0E-42 [7..109] [1..103]
gi|47157060 - gi|47157060|gb|AAT12410.1| mitochondrial cytochrome C [Apis mellifera ligustica]
CYC_APIME - Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2
 7.0E-42 [5..109] [3..107]

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Predicted Domain #1
Region A:
Residues: [1-109] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFKAGSAK KGATLFKTRC LQCHTVEKGG PHKVGPNLHG IFGRHSGQAE GYSYTDANIK  60
   61 KNVLWDENNM SEYLTNPKKY IPGTKMAFGG LKKEKDRNDL ITYLKKACE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 589.980454
Match: 2pccB_
Description: Mitochondrial cytochrome c
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 7.77694826742571 bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity 7.77694826742571 bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity 5.3228546115966 bayes_pls_golite062009
electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity 4.97969104367667 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 4.83198573144889 bayes_pls_golite062009
oxidoreductase activity 4.80453374142732 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.69221581420605 bayes_pls_golite062009
electron carrier activity 4.50051625202265 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 4.39250939893637 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 4.11195915185456 bayes_pls_golite062009
phosphoprotein phosphatase activity 3.07137767450073 bayes_pls_golite062009
protein serine/threonine phosphatase activity 3.05900853572871 bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor 2.75675744166378 bayes_pls_golite062009
peroxidase activity 2.75675744166378 bayes_pls_golite062009
antioxidant activity 2.60087791856484 bayes_pls_golite062009
phosphatase activity 2.58257339159796 bayes_pls_golite062009
phosphoric ester hydrolase activity 2.48742191899955 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.67966224915812 bayes_pls_golite062009
binding 1.60003804759784 bayes_pls_golite062009
transporter activity 1.44083733311658 bayes_pls_golite062009
protein binding 1.33090393131805 bayes_pls_golite062009
transmembrane transporter activity 1.28161778948702 bayes_pls_golite062009
substrate-specific transporter activity 1.15573917988688 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.01443199299167 bayes_pls_golite062009
ion transmembrane transporter activity 0.881486298760893 bayes_pls_golite062009
cation transmembrane transporter activity 0.783993292151034 bayes_pls_golite062009
hydrolase activity 0.624991704964657 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle