YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS55
Organism:	Saccharomyces cerevisiae
Length:	140 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS55.

Description	E-value	Query Range	Subject Range
gi\|25518386, gi\|... - gi\|8920616\|gb\|AAF81338.1\|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi\|74858...	153.0	[0..8]	[124..13]
gi\|114619773 - gi\|114619773\|ref\|XP_528101.2\| PREDICTED: similar to Leptin receptor overlapping transcript-like 1 [P...	152.0	[0..6]	[133..64]
gi\|74197155 - gi\|74197155\|dbj\|BAE35124.1\| unnamed protein product [Mus musculus]	149.0	[0..6]	[133..1]
gi\|66911159, gi\|... - gi\|66911159\|gb\|AAH97642.1\| MGC53950 protein [Xenopus laevis], gi\|27696439\|gb\|AAH43984.1\| MGC53950 pr...	145.0	[0..6]	[133..1]
OBRG_RAT - Leptin receptor gene-related protein OS=Rattus norvegicus GN=Leprot PE=1 SV=1 tr\|G3HY61\|G3HY61... - Leptin receptor gene-related protein OS=Cricetulus griseus GN=I79_015979 PE=4 SV=1	144.0	[0..6]	[133..1]
gi\|60832046, gi\|... - gi\|60832046\|gb\|AAX36995.1\| leptin receptor overlapping transcript-like 1 [synthetic construct], gi\|6...	142.0	[0..6]	[133..1]
gi\|123996815, gi... - gi\|60821033\|gb\|AAX36558.1\| leptin receptor overlapping transcript-like 1 [synthetic construct], gi\|1... LERL1_PONAB - Leptin receptor overlapping transcript-like 1 OS=Pongo abelii GN=LEPROTL1 PE=2 SV=1 LEPROTL1 - leptin receptor overlapping transcript-like 1 ENSPTRT00000037287 - null LERL1_PONPY - Leptin receptor overlapping transcript-like 1 - Pongo pygmaeus (Orangutan)	141.0	[0..6]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEFKVSPLT KIISLSGFLA LGFLLVILSC ALFHNYYPLF DILIFLLAPI PNTIFNAGNK  60
   61 YHTSDFMSDS SNTGQDLAHF LTGMLVTSGI ALPVVFYHCQ LIGHLSCIMC MIGGLIIYSS 120
  121 IVIFKWFFKK DFNEDDSLFG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.638272
Match:	PF04133.5
Description:	No description for PF04133.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.926	N/A	N/A	f.31.1	Photosystem I reaction center subunit XI, PsaL

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits