| Protein: | VPS55 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 140 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS55.
| Description | E-value | Query Range |
Subject Range |
|
|
153.0 | [0..8] | [124..13] |
|
|
152.0 | [0..6] | [133..64] |
|
|
149.0 | [0..6] | [133..1] |
|
|
145.0 | [0..6] | [133..1] |
|
|
144.0 | [0..6] | [133..1] |
|
|
142.0 | [0..6] | [133..1] |
|
|
141.0 | [0..6] | [133..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MMEFKVSPLT KIISLSGFLA LGFLLVILSC ALFHNYYPLF DILIFLLAPI PNTIFNAGNK 60
61 YHTSDFMSDS SNTGQDLAHF LTGMLVTSGI ALPVVFYHCQ LIGHLSCIMC MIGGLIIYSS 120
121 IVIFKWFFKK DFNEDDSLFG
|
| Detection Method: |  |
| Confidence: | 67.638272 |
| Match: | PF04133.5 |
| Description: | No description for PF04133.5 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.926 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.926 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.835 | N/A | N/A | f.57.1 | Description not found. |
| View | Download | 0.746 | N/A | N/A | a.216.1 | Description not found. |
| View | Download | 0.726 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.667 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.439 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.430 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
