YRC Public Data Repository - Protein Structure Prediction

Protein:	REE1
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REE1.

Description	E-value	Query Range	Subject Range
REE1_YEAST - Regulation of enolase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REE1 PE=... REE1 - Cytoplasmic protein involved in the regulation of enolase (ENO1); mRNA expression is induced by calc...	2.0E-72	[1..198]	[1..198]
gi\|13474365, gi\|... - gi\|14025118\|dbj\|BAB51719.1\| mlr5237 [Mesorhizobium loti MAFF303099], gi\|13474365\|ref\|NP_105933.1\| hy...	4.0E-67	[13..196]	[7..191]
gi\|25361367 - pir\|\|F96014 conserved hypothetical protein SMb20675 [imported] - Sinorhizobium meliloti (strain 1021... gi\|16265130, gi\|... - gi\|16265130\|ref\|NP_437922.1\| hypothetical protein SM_b20675 [Sinorhizobium meliloti 1021], gi\|151412...	5.0E-63	[14..196]	[7..190]
gi\|17135703, gi\|... - gi\|17233181\|ref\|NP_490271.1\| hypothetical protein all7165 [Nostoc sp. PCC 7120], gi\|17135703\|dbj\|BAB... gi\|25361369 - pir\|\|AE2498 hypothetical protein all7165 [imported] - Nostoc sp. (strain PCC 7120) plasmid pCC7120al...	3.0E-60	[14..187]	[3..176]
gi\|153820364, gi... - gi\|153820364\|ref\|ZP_01973031.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|121728680, gi... - gi\|121728680\|ref\|ZP_01681697.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121629011\|g... gi\|148875449, gi... - gi\|153829020\|ref\|ZP_01981687.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887544... gi\|153823802, gi... - gi\|229509442\|ref\|ZP_04398924.1\| hypothetical protein VCE_000842 [Vibrio cholerae B33], gi\|229353392\|... gi\|9657745, gi\|1... - gi\|9657745\|gb\|AAF96253.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|11354771 - pir\|\|A82470 conserved hypothetical protein VCA0345 [imported] - Vibrio cholerae (strain N16961 serog...	6.0E-52	[12..188]	[9..203]
gi\|25336761 - pir\|\|A87372 xylan 1,4-beta-xylosidase [imported] - Caulobacter crescentus gi\|16125241, gi\|... - gi\|16125241\|ref\|NP_419805.1\| xylan 1,4-beta-xylosidase [Caulobacter crescentus CB15], gi\|13422273\|gb... gi\|221233977, gi... - gi\|221233977\|ref\|YP_002516413.1\| beta-xylosidase/alpha-L-arabinofuranosidase [Caulobacter crescentus...	4.0E-45	[14..187]	[349..536]
gi\|85674415, gi\|... - gi\|89107145\|ref\|AP_000925.1\| predicted xylosidase/arabinosidase [Escherichia coli str. K-12 substr. ... YAGH_ECOLI - Putative beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) ... EG13347 - CP4-6 prophage; putative xylosidase /arabinosidase / Putative beta-xylosidase, function unknown, CP4-... gi\|170079896, gi... - gi\|170079896\|ref\|YP_001729216.1\| CP4-6 prophage; xylosidase/arabinosidase [Escherichia coli str. K-1... EG13347 - CP4-6 prophage; putative xylosidase /arabinosidase / Putative beta-xylosidase, function unknown, CP4-...	8.0E-45	[26..188]	[356..535]
gi\|185177920, gi... - gi\|2773302\|gb\|AAB97967.1\| xylosidase/arabinosidase [Selenomonas ruminantium], gi\|185177920\|pdb\|3C2U\|...	1.0E-44	[26..186]	[357..534]
gi\|4038456 - gi\|4038456\|gb\|AAC97375.1\| xylan 1,4-beta-xylosidase [Bacillus pumilus]	2.0E-44	[26..187]	[354..531]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESKNTELS QGTWLNKPKS VFQEAGKVTL ETDEKTDFWR ETFYGFTRDS GHFLGVETGS  60
   61 AFTAQVRVQG SYESLYDQAG IMVRIDDGHW LKAGIEISDG HAMLSSVLTN GKSDWSTAVY 120
  121 GGNARDFWLR VTVEKGVLRI QVSSDKKTWP LVRLAPFPTS DHYLVGPMAC TPERGGLKVT 180
  181 FSEWSLTAPL GKALHDLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
carbohydrate binding	0.0124152418993231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: