YRC Public Data Repository - Protein Structure Prediction

Protein:	REE1
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for REE1.

Description	E-value	Query Range	Subject Range
REE1_YEAST - Regulation of enolase protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REE1 PE=... REE1 - Cytoplasmic protein involved in the regulation of enolase (ENO1); mRNA expression is induced by calc...	2.0E-72	[1..198]	[1..198]
gi\|13474365, gi\|... - gi\|14025118\|dbj\|BAB51719.1\| mlr5237 [Mesorhizobium loti MAFF303099], gi\|13474365\|ref\|NP_105933.1\| hy...	4.0E-67	[13..196]	[7..191]
gi\|25361367 - pir\|\|F96014 conserved hypothetical protein SMb20675 [imported] - Sinorhizobium meliloti (strain 1021... gi\|16265130, gi\|... - gi\|16265130\|ref\|NP_437922.1\| hypothetical protein SM_b20675 [Sinorhizobium meliloti 1021], gi\|151412...	5.0E-63	[14..196]	[7..190]
gi\|17135703, gi\|... - gi\|17233181\|ref\|NP_490271.1\| hypothetical protein all7165 [Nostoc sp. PCC 7120], gi\|17135703\|dbj\|BAB... gi\|25361369 - pir\|\|AE2498 hypothetical protein all7165 [imported] - Nostoc sp. (strain PCC 7120) plasmid pCC7120al...	3.0E-60	[14..187]	[3..176]
gi\|153820364, gi... - gi\|153820364\|ref\|ZP_01973031.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|121728680, gi... - gi\|121728680\|ref\|ZP_01681697.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121629011\|g... gi\|148875449, gi... - gi\|153829020\|ref\|ZP_01981687.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887544... gi\|153823802, gi... - gi\|229509442\|ref\|ZP_04398924.1\| hypothetical protein VCE_000842 [Vibrio cholerae B33], gi\|229353392\|... gi\|9657745, gi\|1... - gi\|9657745\|gb\|AAF96253.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|11354771 - pir\|\|A82470 conserved hypothetical protein VCA0345 [imported] - Vibrio cholerae (strain N16961 serog...	6.0E-52	[12..188]	[9..203]
gi\|25336761 - pir\|\|A87372 xylan 1,4-beta-xylosidase [imported] - Caulobacter crescentus gi\|16125241, gi\|... - gi\|16125241\|ref\|NP_419805.1\| xylan 1,4-beta-xylosidase [Caulobacter crescentus CB15], gi\|13422273\|gb... gi\|221233977, gi... - gi\|221233977\|ref\|YP_002516413.1\| beta-xylosidase/alpha-L-arabinofuranosidase [Caulobacter crescentus...	4.0E-45	[14..187]	[349..536]
gi\|85674415, gi\|... - gi\|89107145\|ref\|AP_000925.1\| predicted xylosidase/arabinosidase [Escherichia coli str. K-12 substr. ... YAGH_ECOLI - Putative beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase) ... EG13347 - CP4-6 prophage; putative xylosidase /arabinosidase / Putative beta-xylosidase, function unknown, CP4-... gi\|170079896, gi... - gi\|170079896\|ref\|YP_001729216.1\| CP4-6 prophage; xylosidase/arabinosidase [Escherichia coli str. K-1... EG13347 - CP4-6 prophage; putative xylosidase /arabinosidase / Putative beta-xylosidase, function unknown, CP4-...	8.0E-45	[26..188]	[356..535]
gi\|185177920, gi... - gi\|2773302\|gb\|AAB97967.1\| xylosidase/arabinosidase [Selenomonas ruminantium], gi\|185177920\|pdb\|3C2U\|...	1.0E-44	[26..186]	[357..534]
gi\|4038456 - gi\|4038456\|gb\|AAC97375.1\| xylan 1,4-beta-xylosidase [Bacillus pumilus]	2.0E-44	[26..187]	[354..531]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESKNTELS QGTWLNKPKS VFQEAGKVTL ETDEKTDFWR ETFYGFTRDS GHFLGVETGS  60
   61 AFTAQVRVQG SYESLYDQAG IMVRIDDGHW LKAGIEISDG HAMLSSVLTN GKSDWSTAVY 120
  121 GGNARDFWLR VTVEKGVLRI QVSSDKKTWP LVRLAPFPTS DHYLVGPMAC TPERGGLKVT 180
  181 FSEWSLTAPL GKALHDLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
carbohydrate binding	0.0124152418993231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: