| Protein: | RCY1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 840 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCY1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..840] | [1..840] |
|
|
0.0 | [10..839] | [55..936] |
|
|
0.0 | [1..644] | [1..644] |
|
|
0.0 | [96..840] | [172..872] |
|
|
0.0 | [96..672] | [262..830] |
|
|
0.0 | [357..822] | [64..487] |
|
|
0.0 | [352..822] | [270..702] |
|
|
0.0 | [358..822] | [276..702] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MDDLLKVPEI VTNIASYLST VDYLSFQQVN KRVYAIINGK NDSKYWSLKL TRMGLQQVHS 60
61 NEEEEITLLD ENDNQNSLRI FEIYKSFT
|
| Detection Method: |  |
| Confidence: | 2.60206 |
| Match: | PF00646 |
| Description: | F-box domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [89-466] |
1 11 21 31 41 51
| | | | | |
1 AQNSKKIFVK FYRCYNSYAR KLYNNNLANF FPTSYSNDPL KQTRILNFIK KYNFSNKNDI 60
61 ETFTRIETNF NILREIFINS VLKESELNYQ SNNLAAVARF MKILLISNEE SNAIEFFKSK 120
121 ADLPPSLTVL PSNDELFWAE QPREEDSGGS TVIFNSKNLD TFLNQLRDFL NEKIKLADIL 180
181 FKDEFPVILQ FIESFIQDIL LDILNNILLS YSEFLKENGK DSKANYECVP ELYFTFIKKF 240
241 DTELNDSVNA GANFRKVVRD LLNLYLEPFV VNYMNQTTRV FESLINSQLA NYDTQVQDKQ 300
301 REQNAKIYNT LKDQTDASSA SNNELPNDLS IITETSKTVP EADSKPSTIH QSVHSTDISN 360
361 DKLDFLSSFT KIFKFSNN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [467-518] |
1 11 21 31 41 51
| | | | | |
1 ENQRLKQQLQ LAYNLNLISN NLQNIKSLIS LDLCYKILQE TSEKTDQIYK FH
|
|
Region B: Residues: [532-542] |
1 11 21 31 41 51
| | | | | |
1 QEIFKILITQ L
|
|
Region C: Residues: [688-840] |
1 11 21 31 41 51
| | | | | |
1 KCAIRVVELL SNHCFLLTGA TDKGTIDVYQ QEIGERFFNE IVKHLKKCFI STEGAIWLIC 60
61 DLNYFYDFIA NKLKQKNVVP YFVGLKSIGQ LYIISGKDSK ELGKLISDLG KFNGIFTQEE 120
121 IYEFVQRRSD WVRVRKDVEK VMYGLGIRDC CIM
|
| Detection Method: | |
| Confidence: | 7.46 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [519-531] |
1 11 21 31 41 51
| | | | | |
1 TIESLLPLIK LRC
|
|
Region B: Residues: [543-687] |
1 11 21 31 41 51
| | | | | |
1 NKNHVKPAFE KAILLLQKYN PNEIEQIEIK FNSLSPANTQ VEPLVQFTEL INIGDIILQM 60
61 ISIFYKNELI PKKIIDKNKD FLNDVIQLKK NFETSIDDFV AEGLNIGINK LMDEISFVFK 120
121 TLQLPDDYNP PPPSRNSPIR DIKPT
|
| Detection Method: | |
| Confidence: | 7.46 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [639-840] |
1 11 21 31 41 51
| | | | | |
1 DDFVAEGLNI GINKLMDEIS FVFKTLQLPD DYNPPPPSRN SPIRDIKPTK CAIRVVELLS 60
61 NHCFLLTGAT DKGTIDVYQQ EIGERFFNEI VKHLKKCFIS TEGAIWLICD LNYFYDFIAN 120
121 KLKQKNVVPY FVGLKSIGQL YIISGKDSKE LGKLISDLGK FNGIFTQEEI YEFVQRRSDW 180
181 VRVRKDVEKV MYGLGIRDCC IM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
