| Protein: | RCY1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 840 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCY1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..840] | [1..840] |
|
|
0.0 | [10..839] | [55..936] |
|
|
0.0 | [1..644] | [1..644] |
|
|
0.0 | [96..840] | [172..872] |
|
|
0.0 | [96..672] | [262..830] |
|
|
0.0 | [357..822] | [64..487] |
|
|
0.0 | [352..822] | [270..702] |
|
|
0.0 | [358..822] | [276..702] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MDDLLKVPEI VTNIASYLST VDYLSFQQVN KRVYAIINGK NDSKYWSLKL TRMGLQQVHS 60
61 NEEEEITLLD ENDNQNSLRI FEIYKSFT
|
| Detection Method: |  |
| Confidence: | 2.60206 |
| Match: | PF00646 |
| Description: | F-box domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [89-466] |
1 11 21 31 41 51
| | | | | |
1 AQNSKKIFVK FYRCYNSYAR KLYNNNLANF FPTSYSNDPL KQTRILNFIK KYNFSNKNDI 60
61 ETFTRIETNF NILREIFINS VLKESELNYQ SNNLAAVARF MKILLISNEE SNAIEFFKSK 120
121 ADLPPSLTVL PSNDELFWAE QPREEDSGGS TVIFNSKNLD TFLNQLRDFL NEKIKLADIL 180
181 FKDEFPVILQ FIESFIQDIL LDILNNILLS YSEFLKENGK DSKANYECVP ELYFTFIKKF 240
241 DTELNDSVNA GANFRKVVRD LLNLYLEPFV VNYMNQTTRV FESLINSQLA NYDTQVQDKQ 300
301 REQNAKIYNT LKDQTDASSA SNNELPNDLS IITETSKTVP EADSKPSTIH QSVHSTDISN 360
361 DKLDFLSSFT KIFKFSNN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.329 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.289 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.282 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.262 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.243 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
|
Region A: Residues: [467-518] |
1 11 21 31 41 51
| | | | | |
1 ENQRLKQQLQ LAYNLNLISN NLQNIKSLIS LDLCYKILQE TSEKTDQIYK FH
|
|
Region B: Residues: [532-542] |
1 11 21 31 41 51
| | | | | |
1 QEIFKILITQ L
|
|
Region C: Residues: [688-840] |
1 11 21 31 41 51
| | | | | |
1 KCAIRVVELL SNHCFLLTGA TDKGTIDVYQ QEIGERFFNE IVKHLKKCFI STEGAIWLIC 60
61 DLNYFYDFIA NKLKQKNVVP YFVGLKSIGQ LYIISGKDSK ELGKLISDLG KFNGIFTQEE 120
121 IYEFVQRRSD WVRVRKDVEK VMYGLGIRDC CIM
|
| Detection Method: | |
| Confidence: | 7.46 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [519-531] |
1 11 21 31 41 51
| | | | | |
1 TIESLLPLIK LRC
|
|
Region B: Residues: [543-687] |
1 11 21 31 41 51
| | | | | |
1 NKNHVKPAFE KAILLLQKYN PNEIEQIEIK FNSLSPANTQ VEPLVQFTEL INIGDIILQM 60
61 ISIFYKNELI PKKIIDKNKD FLNDVIQLKK NFETSIDDFV AEGLNIGINK LMDEISFVFK 120
121 TLQLPDDYNP PPPSRNSPIR DIKPT
|
| Detection Method: | |
| Confidence: | 7.46 |
| Match: | 1n1bA |
| Description: | (+)-bornyl diphosphate synthase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [639-840] |
1 11 21 31 41 51
| | | | | |
1 DDFVAEGLNI GINKLMDEIS FVFKTLQLPD DYNPPPPSRN SPIRDIKPTK CAIRVVELLS 60
61 NHCFLLTGAT DKGTIDVYQQ EIGERFFNEI VKHLKKCFIS TEGAIWLICD LNYFYDFIAN 120
121 KLKQKNVVPY FVGLKSIGQL YIISGKDSKE LGKLISDLGK FNGIFTQEEI YEFVQRRSDW 180
181 VRVRKDVEKV MYGLGIRDCC IM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
