YRC Public Data Repository - Protein Structure Prediction

Protein:	YJL171C
Organism:	Saccharomyces cerevisiae
Length:	396 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJL171C.

Description	E-value	Query Range	Subject Range
gi\|49529016 - gi\|49529016\|emb\|CAG62678.1\| unnamed protein product [Candida glabrata] gi\|50294582, gi\|... - gi\|50294582\|ref\|XP_449702.1\| hypothetical protein CAGL0M08206g [Candida glabrata CBS138], gi\|4952901...	491.0	[0..5]	[396..8]
gi\|49640423, gi\|... - gi\|50302711\|ref\|XP_451292.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640423\|emb\|CAH0288... gi\|49640423 - gi\|49640423\|emb\|CAH02880.1\| KLLA0A06556p [Kluyveromyces lactis]	447.0	[0..1]	[394..1]
gi\|45190477, gi\|... - gi\|45190477\|ref\|NP_984731.1\| AEL130Cp [Ashbya gossypii ATCC 10895], gi\|44983419\|gb\|AAS52555.1\| AEL13... gi\|44983419 - gi\|44983419\|gb\|AAS52555.1\| AEL130Cp [Ashbya gossypii ATCC 10895]	387.0	[0..7]	[386..40]
gi\|46431662, gi\|... - gi\|68491471\|ref\|XP_710457.1\| hypothetical protein CaO19.9467 [Candida albicans SC5314], gi\|46431662\|... orf19.9467 - PGA52 CGDID:CAL0002515 Assembly 19, Contig19-20136 (5221, 6375) CDS, translated using codon table 12...	375.0	[0..8]	[369..5]
TOS1_YEAST - Protein TOS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOS1 PE=1 SV=1 TOS1 - Covalently-bound cell wall protein of unknown function; identified as a cell cycle regulated SBF tar...	347.0	[0..104]	[341..220]
YH6B_SCHPO - Uncharacterized serine-rich protein P23A10.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... SPBP23A10.11c - conserved fungal protein	308.0	[0..112]	[342..271]
gi\|1749624, gi\|1... - gi\|1749624\|dbj\|BAA13869.1\| unnamed protein product [Schizosaccharomyces pombe], pir\|\|T43012 conserve...	281.0	[0..112]	[342..93]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSIVLSVC MFMLHTVAAS GPQSYQKLDF TNVGFTGSYV DVNKFKDITN NESCTCEVGD  60
   61 RVWFSGKNAP LAD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [74-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLSVHFRGPL KLKQFAFYTS PGFTVNNSRS SSDWNRLAYY ESSSKTADNV TFLNHGGEAS  60
   61 PCLGNALSYA SSNGTGSASE ATVLADGTLI SSDQEYIIYS NVSCPKSGYD KGCGVYRSGI 120
  121 PAYYGYGGTT KMFLFEFEMP TETEKNSSSI GYYDLPAIWL LNDHIARTSQ YPTNANCSCW 180
  181 ASGCGEYDIF EAMNGTEKNH LYSTFHTFQG IEDLGTGIQS YGYITRNTTG TMKGGVVFDS 240
  241 SGNVVSFISD ATPFNGTVSA DTVNDLLAAI PENETYSSQL MSISATAPST TSLSNGVRLT 300
  301 NMQNGVWYYI LAIFTAFTQV VLI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits