| Protein: | SET2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 733 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SET2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..724] | [1..724] |
|
|
0.0 | [21..706] | [82..774] |
|
|
3.0E-92 | [39..439] | [965..1333] |
|
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3.0E-68 | [4..336] | [916..1268] |
|
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5.0E-66 | [31..325] | [1762..2057] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MSKNQSVSAS EDEKEILNNN AEGHKPQRLF DQEPDLTEEA LTKFENLDDC IYANKRIGTF 60
61 KNNDFMECDC YEEFSDGVNH ACDEDSDCI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.475 | d.42.1 | POZ domain |
| View | Download | 0.465 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.456 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.575 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.484 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.455 | a.64.1 | Saposin |
| View | Download | 0.453 | a.46.1 | Methionine synthase domain |
| View | Download | 0.401 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.395 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.387 | a.118.1 | ARM repeat |
| View | Download | 0.377 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.362 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.354 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.352 | a.74.1 | Cyclin-like |
| View | Download | 0.348 | a.64.1 | Saposin |
| View | Download | 0.344 | a.2.3 | Chaperone J-domain |
| View | Download | 0.341 | a.4.1 | Homeodomain-like |
| View | Download | 0.339 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.332 | a.126.1 | Serum albumin-like |
| View | Download | 0.313 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.293 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.286 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.285 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.282 | a.74.1 | Cyclin-like |
| View | Download | 0.275 | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.271 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.254 | d.42.1 | POZ domain |
| View | Download | 0.253 | a.64.1 | Saposin |
| View | Download | 0.246 | a.112.1 | Description not found. |
| View | Download | 0.244 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.238 | a.7.1 | Spectrin repeat |
| View | Download | 0.233 | a.24.3 | Cytochromes |
| View | Download | 0.227 | a.26.1 | 4-helical cytokines |
| View | Download | 0.225 | a.4.12 | TrpR-like |
| View | Download | 0.216 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.215 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.210 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.206 | a.142.1 | PTS-regulatory domain, PRD |
|
Region A: Residues: [90-279] |
1 11 21 31 41 51
| | | | | |
1 NRLTLIECVN DLCSSCGNDC QNQRFQKKQY APIAIFKTKH KGYGVRAEQD IEANQFIYEY 60
61 KGEVIEEMEF RDRLIDYDQR HFKHFYFMML QNGEFIDATI KGSLARFCNH SCSPNAYVNK 120
121 WVVKDKLRMG IFAQRKILKG EEITFDYNVD RYGAQAQKCY CEEPNCIGFL GGKTQTDAAS 180
181 LLPQNIADAL
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| Detection Method: | |
| Confidence: | 64.031517 |
| Match: | PF00856 |
| Description: | SET domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [280-733] |
1 11 21 31 41 51
| | | | | |
1 GVTVSMEKKW LKLKKLSGEP IIKNENENIN IEFLQSLEVQ PIDSPVDVTK IMSVLLQQDN 60
61 KIIASKLLKR LFTIDDDSLR HQAIKLHGYT CFSKMLKLFI TEQPQVDGKG NETEEDDIKF 120
121 IKGILDFLLE LPKTTRNGIE SSQIDNVVKT LPAKFPFLKP NCDELLEKWS KFETYKRITK 180
181 KDINVAASKM IDLRRVRLPP GWEIIHENGR PLYYNAEQKT KLHYPPSGSS KVFSSRSNTQ 240
241 VNSPSSSGIP KTPGALDSKK HKLSDEEYER KKQKRLEYER IALERAKQEE LESLKQKLKL 300
301 ENERKSVLED IIAEFNKQKE LQKEESKKLV EAKEAKRLKR KTVSQSQRLE HNWNKFFASF 360
361 VPNLIKKNPQ SKQFDHENIK QCAKDIVKIL TTKELKKDSS RAPPDDLTKG KRHKVKEFIN 420
421 SYMDKIILKK KQKKALGLSS ASTRMSSPPP STSS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.427 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.424 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.382 | a.1.1 | Globin-like |
| View | Download | 0.378 | a.74.1 | Cyclin-like |
| View | Download | 0.344 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [608-733] |
1 11 21 31 41 51
| | | | | |
1 LVEAKEAKRL KRKTVSQSQR LEHNWNKFFA SFVPNLIKKN PQSKQFDHEN IKQCAKDIVK 60
61 ILTTKELKKD SSRAPPDDLT KGKRHKVKEF INSYMDKIIL KKKQKKALGL SSASTRMSSP 120
121 PPSTSS
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| Detection Method: | |
| Confidence: | 36.30103 |
| Match: | 2c5zA |
| Description: | Structure and CTD binding of the Set2 SRI domain |
Matching Structure (courtesy of the PDB): |
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