YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DPB11
Organism: Saccharomyces cerevisiae
Length: 764 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPB11.

Description E-value Query
Range
Subject
Range
gi|12407246 - gi|12407246|dbj|BAA07725.2| subunit of DNA polymerase II [Saccharomyces cerevisiae]
0.0 [1..764] [1..764]
rad4 - BRCT domain protein Rad4
RAD4_SCHPO - S-M checkpoint control protein rad4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad4 P...
0.0 [2..489] [5..440]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [2..461] [5..415]
gi|13938110 - gi|13938110|gb|AAH07170.1| Topbp1 protein [Mus musculus]
7.0E-92 [29..478] [5..462]
gi|153217453, gi... - gi|5902138|ref|NP_008958.1| topoisomerase (DNA) II binding protein 1 [Homo sapiens], gi|3845613|dbj|...
2.0E-82 [3..478] [112..591]
PAXI1_XENLA - PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1
3.0E-68 [4..319] [795..1073]

Back

Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPFQGITFC PTAINNEILA KKISKKIIKL GGIFSKDLTR QVNVLVVGST TNTNKFKFAV  60
   61 KHRFDIIFID IQAIDDIYQL WLSGENILPD SNTATMTGST YEMLKILYRR FSFKYLHNFN 120
  121 IFIG

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 11.3
Match: 1l0bA
Description: Breast cancer associated protein, BRCA1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [125-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RITDTNITSI DSLVRSIKKL GCSSYNYQNF VIKDTSSHND DDDQGQNGQI SIFVTDTLLG  60
   61 ARVNAAIEQN IPIVHFKWIL DCQKRSALLP YDPYYLLPNI KDLPYDSIGS NSCDCWDKIN 120
  121 TTFPTNIDAQ SSLQRQQSS

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 11.3
Match: 1l0bA
Description: Breast cancer associated protein, BRCA1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [264-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STLTPSLPKT SSLLNKFKPK GEKIWDKAMS LQQHSKTNFS VLGQSPLSIN NKQEDLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [321-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNSTLIFKNC AFIIHHIFPG NHRSILTKIV VQNGGKIETS YLSGIYDHSY YIIPSNKALD  60
   61 SFNDLPEIID DNDGIVTEFF IERCLYYQKL LHPIDLWSKP FLSTIEFQV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 8.522879
Match: PF00533
Description: BRCA1 C Terminus (BRCT) domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [430-764]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSKLLHHE FSSSPFLNVT ITGFSGVELL HLTKVLNLLK PMGINYVEYL NKSTDILLIN  60
   61 LAALPSIPKT HPLWSNEFSD LFTQFCINNN NDDPGDNNRK DFQNNSILRN SMKRKIEYIK 120
  121 KFHSIPVVTP AFIFKLLSAA SGENNEIFLN NIKWCIICPR GHKDDFKCKI KKPYYTSISS 180
  181 EKKYQNNDPK IDKTILLKRN NSSLSEHSMK DTKNELLQKI RETDSGRKKR SVSSSIMDVS 240
  241 SERQMPDTKR IKLESLPKNF VPKQIKRTTS WGTIMSENVP TEQPTAISNP EEIPRTEEVS 300
  301 HTQVTYGSIQ DKKRTASLEK PMRRQTRNQT KELDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle