| Protein: | DPB11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 764 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPB11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..764] | [1..764] |
|
|
0.0 | [2..489] | [5..440] |
|
|
0.0 | [2..461] | [5..415] |
|
|
7.0E-92 | [29..478] | [5..462] |
|
|
2.0E-82 | [3..478] | [112..591] |
|
|
3.0E-68 | [4..319] | [795..1073] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MKPFQGITFC PTAINNEILA KKISKKIIKL GGIFSKDLTR QVNVLVVGST TNTNKFKFAV 60
61 KHRFDIIFID IQAIDDIYQL WLSGENILPD SNTATMTGST YEMLKILYRR FSFKYLHNFN 120
121 IFIG
|
| Detection Method: |  |
| Confidence: | 11.3 |
| Match: | 1l0bA |
| Description: | Breast cancer associated protein, BRCA1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [125-263] |
1 11 21 31 41 51
| | | | | |
1 RITDTNITSI DSLVRSIKKL GCSSYNYQNF VIKDTSSHND DDDQGQNGQI SIFVTDTLLG 60
61 ARVNAAIEQN IPIVHFKWIL DCQKRSALLP YDPYYLLPNI KDLPYDSIGS NSCDCWDKIN 120
121 TTFPTNIDAQ SSLQRQQSS
|
| Detection Method: | |
| Confidence: | 11.3 |
| Match: | 1l0bA |
| Description: | Breast cancer associated protein, BRCA1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [264-320] |
1 11 21 31 41 51
| | | | | |
1 STLTPSLPKT SSLLNKFKPK GEKIWDKAMS LQQHSKTNFS VLGQSPLSIN NKQEDLS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.396 | a.4.1 | Homeodomain-like |
| View | Download | 0.454 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.568 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.415 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.435 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.339 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.332 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.322 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.306 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.287 | a.5.2 | UBA-like |
| View | Download | 0.271 | a.5.2 | UBA-like |
| View | Download | 0.261 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.238 | g.3.7 | Scorpion toxin-like |
| View | Download | 0.215 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.206 | a.112.1 | Description not found. |
| View | Download | 0.203 | a.144.1 | PABC (PABP) domain |
|
Region A: Residues: [321-429] |
1 11 21 31 41 51
| | | | | |
1 DNSTLIFKNC AFIIHHIFPG NHRSILTKIV VQNGGKIETS YLSGIYDHSY YIIPSNKALD 60
61 SFNDLPEIID DNDGIVTEFF IERCLYYQKL LHPIDLWSKP FLSTIEFQV
|
| Detection Method: | |
| Confidence: | 8.522879 |
| Match: | PF00533 |
| Description: | BRCA1 C Terminus (BRCT) domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [430-764] |
1 11 21 31 41 51
| | | | | |
1 SSSSKLLHHE FSSSPFLNVT ITGFSGVELL HLTKVLNLLK PMGINYVEYL NKSTDILLIN 60
61 LAALPSIPKT HPLWSNEFSD LFTQFCINNN NDDPGDNNRK DFQNNSILRN SMKRKIEYIK 120
121 KFHSIPVVTP AFIFKLLSAA SGENNEIFLN NIKWCIICPR GHKDDFKCKI KKPYYTSISS 180
181 EKKYQNNDPK IDKTILLKRN NSSLSEHSMK DTKNELLQKI RETDSGRKKR SVSSSIMDVS 240
241 SERQMPDTKR IKLESLPKNF VPKQIKRTTS WGTIMSENVP TEQPTAISNP EEIPRTEEVS 300
301 HTQVTYGSIQ DKKRTASLEK PMRRQTRNQT KELDS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
