| Protein: | YPS6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 537 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPS6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..428] | [1..379] |
|
|
0.0 | [1..428] | [1..379] |
|
|
0.0 | [1..428] | [1..379] |
|
|
0.0 | [1..429] | [1..386] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MQLISILSLL SSLMCSLTVL GSSASSYVKF PVQKLADIIN ICTQDVSTVF KRNEVLNTTV 60
61 INGIGVYV
|
|
Region B: Residues: [245-281] |
1 11 21 31 41 51
| | | | | |
1 NKIAYSLFLN GPDAHFGSIL FGAVDKSKYT GQLYTLP
|
|
Region C: Residues: [411-451] |
1 11 21 31 41 51
| | | | | |
1 DAYVVYDLEN YEISIAQASF NNQEEDIEVI SDTVPGATPA P
|
| Detection Method: |  |
| Confidence: | 553.38764 |
| Match: | 1ypsA_ |
| Description: | No description for 1ypsA_ was found. |
| Term | Confidence | Notes |
| aspartic-type endopeptidase activity | 7.68175187751599 | bayes_pls_golite062009 |
| aspartic-type peptidase activity | 7.68175187751599 | bayes_pls_golite062009 |
| peptidase activity | 3.09986068674657 | bayes_pls_golite062009 |
| endopeptidase activity | 3.08503547117772 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 2.89367142096521 | bayes_pls_golite062009 |
| hydrolase activity | 2.46470106080415 | bayes_pls_golite062009 |
| catalytic activity | 1.54514410489082 | bayes_pls_golite062009 |
| binding | 0.742107862879277 | bayes_pls_golite062009 |
| protein binding | 0.401296299316154 | bayes_pls_golite062009 |
|
Region A: Residues: [69-244] |
1 11 21 31 41 51
| | | | | |
1 VKMEIGTPPQ TLYLQLDTGS SDMIVNNADI AYCKSMSDGS DYASTDNYEL TATFNGLPST 60
61 TISSEAYNTL CSYWGTFDAS NSSTFENNAT FFNNTYGDGT YYAGTYGTDV VSFENITLND 120
121 FTFGVSNDTI GNPSGILGIS LPIAEFTDGI EYALALNRTP FIYDNFPMEL KNQGKI
|
|
Region B: Residues: [282-410] |
1 11 21 31 41 51
| | | | | |
1 MLQAFNTLGS NPGMIITAQS VAILDSESGN KTVSDIQFPV MLDSGTTFSY LPTEIAEAIG 60
61 KSFDGEYSSD DQGYIFDCSK VNDTLLSVDF GGFNISANIS NFVTSAKDRC VLNVKQSEST 120
121 YMLGDAFLV
|
| Detection Method: | |
| Confidence: | 553.38764 |
| Match: | 1ypsA_ |
| Description: | No description for 1ypsA_ was found. |
|
Region A: Residues: [452-537] |
1 11 21 31 41 51
| | | | | |
1 GYFSTWVYKP GSPIGTGDFI NVSWTSYSEF SQYKSLLATA AQSDDASSFS SSGGSSESTT 60
61 KKQNAGYKYR SSFSFSLLSF ISYFLL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.610 | a.47.2 | t-snare proteins |
| View | Download | 0.445 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.413 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.620 | a.46.1 | Methionine synthase domain |
| View | Download | 0.542 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.407 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.384 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.380 | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
| View | Download | 0.365 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.360 | a.59.1 | PAH2 domain |
| View | Download | 0.343 | a.2.7 | tRNA-binding arm |
| View | Download | 0.333 | d.58.13 | Anticodon-binding domain of PheRS |
| View | Download | 0.326 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.316 | a.39.1 | EF-hand |
| View | Download | 0.313 | a.112.1 | Description not found. |
| View | Download | 0.312 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.306 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.296 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.296 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.291 | d.15.1 | Ubiquitin-like |
| View | Download | 0.284 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.273 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.272 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.272 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.262 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.251 | a.101.1 | Uteroglobin-like |
| View | Download | 0.249 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.246 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.241 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.237 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.235 | a.65.1 | Annexin |
| View | Download | 0.230 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.229 | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.228 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.227 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.221 | a.7.7 | BAG domain |
| View | Download | 0.220 | a.7.1 | Spectrin repeat |
| View | Download | 0.218 | a.105.1 | FIS-like |
| View | Download | 0.215 | d.58.17 | Metal-binding domain |
| View | Download | 0.211 | a.11.2 | Second domain of FERM |
| View | Download | 0.206 | d.104.1 | Class II aaRS and biotin synthetases |
| View | Download | 0.201 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.200 | a.64.1 | Saposin |
