| Protein: | SLM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 686 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLM1.
| Description | E-value | Query Range |
Subject Range |
|
|
604.0 | [0..24] | [678..13] |
|
|
400.0 | [0..1] | [680..1] |
|
|
390.0 | [0..138] | [664..200] |
|
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380.0 | [0..1] | [659..1] |
|
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350.0 | [0..161] | [653..12] |
|
|
284.0 | [0..213] | [627..207] |
|
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281.0 | [0..213] | [627..21] |
|
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280.0 | [0..213] | [627..175] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MSKNNTMTSA VSDMLSQQQL NLQHLHNLQQ HTRSMTSADH ANVLQQQQQQ QQQQQQQQQQ 60
61 QQQSASFQNG SLTSDI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.747 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.639 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.638 | a.5.10 | Description not found. |
| View | Download | 0.625 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.612 | a.5.10 | Description not found. |
| View | Download | 0.552 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.527 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.508 | a.77.1 | DEATH domain |
| View | Download | 0.469 | a.112.1 | Description not found. |
| View | Download | 0.448 | a.76.1 | Iron-dependent represor protein, dimerization domain |
|
Region A: Residues: [77-254] |
1 11 21 31 41 51
| | | | | |
1 NQQSYLNGQP VPSTSNSTFQ NNRTLTMNSG GLQGIISNGS PNIDSNTNVT IAVPDPNNNN 60
61 GKQLQGKNSL TNTSILSRAR SSLQRQRLAQ QQQQQQDPRS PLVILVPTAA QPTDILAARF 120
121 SAWRNVIKSV IVYLTEIASI QDEIVRQQLR LSHAVQFPFF SIENQYQPSS QEDKSVQK
|
| Detection Method: | |
| Confidence: | 8.56 |
| Match: | |
| Description: | No description for 1itwA was found. |
|
Region A: Residues: [255-409] |
1 11 21 31 41 51
| | | | | |
1 FFLPLGNGSI QDLPTILNQY HESLASSASK ASRELTNDVI PRLEDLRRDL IVKIKEIKSL 60
61 QSDFKNSCSK ELQQTKQAMK QFQESLKDAR YSVPKQDPFL TKLALDRQIK KQLQEENFLH 120
121 EAFDNLETSG AELEKIVVME IQNSLTIYAR LLGQE
|
| Detection Method: | |
| Confidence: | 8.56 |
| Match: | |
| Description: | No description for 1itwA was found. |
|
Region A: Residues: [410-467] |
1 11 21 31 41 51
| | | | | |
1 AQLVFDILIS KLDSGFFNVD PQFEWDNFIS RDPNFLLPNL PMRTFKEIVY KYQFDPLT
|
| Detection Method: | |
| Confidence: | 8.59 |
| Match: | |
| Description: | No description for 1i5pA was found. |
|
Region A: Residues: [468-592] |
1 11 21 31 41 51
| | | | | |
1 YEIKSGFLER RSKFLKSYSK GYYVLTPNFL HEFKTADRKK DLVPVMSLAL SECTVTEHSR 60
61 KNSTSSPNST GSDAKFVLHA KQNGIIRRGH NWVFKADSYE SMMSWFDNLK ILTSTSNIQD 120
121 KYKFI
|
| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 1fhwA |
| Description: | Grp1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [593-686] |
1 11 21 31 41 51
| | | | | |
1 TQKLNLNSDG KPKLTNNHTS INKYQLSNAN STMVENDEND DINSNYVGST VTPKLDNQTN 60
61 TNTSMSSLPD TNDSELQDQV PNIYIQTPIN DFKS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.273 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.273 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.264 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.264 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.247 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | N/A | N/A | d.15.5 | Staphylokinase/streptokinase |
| View | Download | 0.205 | N/A | N/A | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
