YRC Public Data Repository - Protein Structure Prediction

Protein:	RHR2
Organism:	Saccharomyces cerevisiae
Length:	271 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHR2.

Description	E-value	Query Range	Subject Range
gi\|151943106 - gi\|151943106\|gb\|EDN61441.1\| DL-glycerol-3-phosphatase [Saccharomyces cerevisiae YJM789] RHR2 - Constitutively expressed isoform of DL-glycerol-3-phosphatase; involved in glycerol biosynthesis, in... gi\|207344308 - gi\|207344308\|gb\|EDZ71495.1\| YIL053Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406273 - gi\|190406273\|gb\|EDV09540.1\| DL-glycerol-3-phosphatase [Saccharomyces cerevisiae RM11-1a]	1.0E-51	[1..271]	[1..271]
gi\|25303791 - pir\|\|D97005 probable phosphatase [imported] - Clostridium acetobutylicum gi\|15023749, gi\|... - gi\|15894142\|ref\|NP_347491.1\| phosphatase [Clostridium acetobutylicum ATCC 824], gi\|15023749\|gb\|AAK78...	1.0E-36	[33..244]	[1..209]
GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae GN=gph PE=3 SV=1	2.0E-36	[29..246]	[1..224]
gi\|126520826, gi... - gi\|153821629\|ref\|ZP_01974296.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|153829003, gi... - gi\|153829003\|ref\|ZP_01981670.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|227811728, gi... - gi\|227811728\|ref\|YP_002811738.1\| CbbY family protein [Vibrio cholerae M66-2], gi\|227010870\|gb\|ACP070... gi\|227119283, gi... - gi\|227119283\|ref\|YP_002821178.1\| CbbY family protein [Vibrio cholerae O395], gi\|227014733\|gb\|ACP1094... gi\|121726959, gi... - gi\|121726959\|ref\|ZP_01680155.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|121586870, gi... - gi\|121586870\|ref\|ZP_01676651.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|153221840, gi... - gi\|153221840\|ref\|ZP_01952705.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|9657489, gi\|1... - gi\|9657489\|gb\|AAF96016.1\| CbbY family protein [Vibrio cholerae O1 biovar eltor str. N16961], gi\|1560... gi\|124116239, gi... - gi\|153212861\|ref\|ZP_01948478.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|11354451 - pir\|\|A82498 CbbY family protein VCA0102 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|126511761, gi... - gi\|153817719\|ref\|ZP_01970386.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole... gi\|254850367, gi... - gi\|254850367\|ref\|ZP_05239717.1\| haloacid dehalogenase/epoxide hydrolase family protein [Vibrio chole...	1.0E-35	[30..246]	[3..215]
gi\|30696124, gi\|... - gi\|30696124\|ref\|NP_564718.2\| haloacid dehalogenase-like hydrolase family protein [Arabidopsis thalia...	9.0E-35	[11..250]	[51..292]

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Predicted Domain #1

Region A:
Residues: [1-48]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFNVLKYI RTTKANIQTI AMPLTTKPLS LKINAALFDV DGTIIISQ

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [101-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEIPEKYGEH SIEVPGAVKL CNALNALPKE KWAVATSGTR DMAKKWFDIL KIKRPEYF

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [173-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYLKGRNGLG FPINEQDPSK SKVVVFEDAP AGIAAGKAAG CKIVGIATTF DLDFLKEKGC  60
   61 DIIVKNHESI RVGEYNAETD EVELIFDDYL YAKDDLLKW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1f5sA_
Description:	Phosphoserine phosphatase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [49-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAIAAFWRDF GKDKPYFDAE HVIHISHGWR TYDAIAKFAP DFADEEYVNK LE

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [159-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITANDVKQGK PHPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1f5sA_
Description:	Phosphoserine phosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits