| Protein: | GVP36 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 326 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GVP36.
| Description | E-value | Query Range |
Subject Range |
|
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3.0E-72 | [1..326] | [1..326] |
|
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1.0E-65 | [32..317] | [10..260] |
|
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5.0E-65 | [32..317] | [10..260] |
|
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2.0E-64 | [32..317] | [10..260] |
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7.0E-61 | [32..322] | [10..267] |
|
Region A: Residues: [1-113] |
1 11 21 31 41 51
| | | | | |
1 MSFNAFASSL SKKLQEISTS VSEKTQELPS LAQSTQRMVQ ERLGQVTDIS QLPREYTELE 60
61 DKVDTIKLIY NHFLGVTAIY ENGSYDYPKY INESVNEFSR SVASKLTELT HAT
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.757 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.543 | a.74.1 | Cyclin-like |
| View | Download | 0.430 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.469 | d.129.4 | Cell-division protein ZipA, C-terminal domain |
| View | Download | 0.479 | a.26.1 | 4-helical cytokines |
| View | Download | 0.375 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.358 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.338 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.321 | a.7.8 | GAT domain |
| View | Download | 0.310 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.304 | a.25.1 | Ferritin-like |
| View | Download | 0.300 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.275 | a.7.7 | BAG domain |
| View | Download | 0.266 | a.26.1 | 4-helical cytokines |
| View | Download | 0.263 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.254 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.246 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.241 | a.7.1 | Spectrin repeat |
| View | Download | 0.237 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.234 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.233 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.232 | a.7.1 | Spectrin repeat |
| View | Download | 0.227 | c.55.1 | Actin-like ATPase domain |
| View | Download | 0.222 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.222 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.216 | d.79.3 | L30e-like |
| View | Download | 0.215 | a.1.1 | Globin-like |
| View | Download | 0.212 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.211 | a.47.2 | t-snare proteins |
| View | Download | 0.209 | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.209 | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.201 | d.58.41 | SEA domain |
| View | Download | 0.201 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.201 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.200 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.200 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.200 | d.41.2 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |
| Term | Confidence | Notes |
| binding | 2.2879693624429 | bayes_pls_golite062009 |
| protein binding | 2.08046860800611 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.02414077739262 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.067852352497379 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0314833132263769 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0230779033512197 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0199119414909105 | bayes_pls_golite062009 |
|
Region A: Residues: [114-326] |
1 11 21 31 41 51
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1 SASEAQNILV APGPIKEPKT LNYALSKVAL NSSECLNKMF PTEEQPLASA LLQFSDVQAK 60
61 IAQARIQQDT LIQTKFNKNL RERLSFEIGK ADKCRKDVHS MRLRYDVART NLANNKKPEK 120
121 EASLRVQMET LEDQFAQVTE DATVCLQEVI SHANFSEDLK ELAKAQAEYF ETSAGLMKEF 180
181 LSNSFAEEPE AKPEVAEEEK PQTAISMNDE DDA
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| Detection Method: | |
| Confidence: | 7.91 |
| Match: | 1i49A |
| Description: | Arfaptin, Rac-binding fragment |
Matching Structure (courtesy of the PDB): |
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