YRC Public Data Repository - Protein Structure Prediction

Protein:	FAA3
Organism:	Saccharomyces cerevisiae
Length:	694 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAA3.

Description	E-value	Query Range	Subject Range
FAA4 - Long chain fatty acyl-CoA synthetase, activates imported fatty acids with a preference for C12:0-C16... LCF4_YEAST - Long-chain-fatty-acid--CoA ligase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAA4...	0.0	[1..694]	[1..694]
ACSL1_MOUSE - Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2	0.0	[23..691]	[43..695]
ACSA_SYNY3 - Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsA PE=3 SV=1 ACSA_SYNY3 - Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=acsA PE=3 ... gi\|7437824 - pir\|\|S75763 acetate-CoA ligase (EC 6.2.1.1) - Synechocystis sp. (strain PCC 6803)	0.0	[2..685]	[19..632]
ACSL6 - acyl-CoA synthetase long-chain family member 6	0.0	[6..691]	[56..694]
ACSL5_RAT - Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=1 SV=1	0.0	[18..691]	[25..679]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[18..691]	[25..679]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQHSVAVG KAANEHETAP RRNVRVKKRP LIRPLNSSAS TLYEFALECF NKGGKRDGMA  60
   61 WRD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [88-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TWLYYEMSPY KMM

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [267-550]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMYTSGSISA PKGVVLTHYN IVSGIAGVGH NVFGWIGSTD RVLSFLPLAH IFELVFEFEA  60
   61 FYWNGILGYG SVKTLTNTST RNCKGDLVEF KPTIMIGVAA VWETVRKAIL EKISDLTPVL 120
  121 QKIFWSAYSM KEKSVPCTGF LSRMVFKKVR QATGGHLKYI MNGGSAISID AQKFFSIVLC 180
  181 PMIIGYGLTE TVANACVLEP DHFEYGIVGD LVGSVTAKLV DVKDLGYYAK NNQGELLLKG 240
  241 APVCSEYYKN PIETAVSFTY DGWFRTGDIV EWTPKGQLKI IDRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	264.228787
Match:	1ba3__
Description:	Luciferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [64-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIEIHETKKT IVRKVDGKDK SIEK

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [101-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYQELIWVMH DMGRGLAKIG IKPNGEHKFH IFASTSHKWM KIFLGCISQG IPVVTAYDTL  60
   61 GESGLIHSMV ETESAAIFTD NQLLAKMIVP LQSAKDIKFL IHNEPIDPND RRQNGKLYKA 120
  121 AKDAINKIRE VRPDIKIYSF EEVVKIGKKS KDEVKLHPPE PKDLAC

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [551-694]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNLVKTLNGE YIALEKLESV YRSNSYVKNI CVYADESRVK PVGIVVPNPG PLSKFAVKLR  60
   61 IMKKGEDIEN YIHDKALRNA VFKEMIATAK SQGLVGIELL CGIVFFDEEW TPENGFVTSA 120
  121 QKLKRREILA AVKSEVERVY KENS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	264.228787
Match:	1ba3__
Description:	Luciferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits