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View Structure Prediction Details

Protein: RPC10
Organism: Saccharomyces cerevisiae
Length: 70 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC10.

Description E-value Query
Range
Subject
Range
gi|49525925, gi|... - gi|50288377|ref|XP_446617.1| unnamed protein product [Candida glabrata], gi|49525925|emb|CAG59544.1|...
gi|49525925 - gi|49525925|emb|CAG59544.1| unnamed protein product [Candida glabrata]
108.0 [0..1] [70..1]
gi|50306889, gi|... - gi|50306889|ref|XP_453420.1| unnamed protein product [Kluyveromyces lactis], gi|49642554|emb|CAH0051...
gi|49642554 - gi|49642554|emb|CAH00516.1| KLLA0D08008p [Kluyveromyces lactis]
97.0 [0..1] [70..1]
gi|8248885 - gi|8248885|gb|AAB27565.2| metallothionein-I gene transcription activator [Mus sp.]
95.0 [0..23] [70..58]
gi|26359970, gi|... - gi|86355514|ref|NP_001034457.1| polymerase (RNA) II (DNA directed) polypeptide K isoform a [Mus musc...
93.0 [0..23] [70..52]
rpb-12 - RNA polymerases I, II and III shared polypeptide (approx 7kd) status:Confirmed UniProt:Q9U3I0 protei...
91.0 [0..18] [70..10]
gi|44984495, gi|... - gi|45198544|ref|NP_985573.1| AFR026Cp [Ashbya gossypii ATCC 10895], gi|44984495|gb|AAS53397.1| AFR02...
gi|44984495 - gi|44984495|gb|AAS53397.1| AFR026Cp [Ashbya gossypii ATCC 10895]
91.0 [0..1] [70..1]
gi|25396844, gi|... - gi|4583672|emb|CAB40410.1| DNA-directed RNA polymerases I, II and III [Guillardia theta], pir||C9010...
90.0 [0..11] [70..11]
gi|157755303 - gi|157755303|ref|XP_001669995.1| Hypothetical protein CBG21781 [Caenorhabditis briggsae AF16]
gi|187022348, gi... - gi|39586459|emb|CAE74118.1| Hypothetical protein CBG21781 [Caenorhabditis briggsae], gi|187022348|em...
90.0 [0..18] [70..10]
gi|46436658, gi|... - gi|68482071|ref|XP_715053.1| hypothetical protein CaO19.7255 [Candida albicans SC5314], gi|46436658|...
orf19.7255 - RPC10 CGDID:CAL0003902 Assembly 19, Contig19-2507 (86334, 86642) CDS, translated using codon table 1...
88.0 [0..3] [70..35]
gi|115653155, gi... - gi|115946461|ref|XP_001187419.1| PREDICTED: similar to MGC79127 protein [Strongylocentrotus purpurat...
88.0 [0..14] [70..9]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSREGFQIPT NLDAAAAGTS QARTATLKYI CAECSSKLSL SRTDAVRCKD CGHRILLKAR  60
   61 TKRLVQFEAR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle