YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC10
Organism:	Saccharomyces cerevisiae
Length:	70 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC10.

Description	E-value	Query Range	Subject Range
gi\|49525925, gi\|... - gi\|50288377\|ref\|XP_446617.1\| unnamed protein product [Candida glabrata], gi\|49525925\|emb\|CAG59544.1\|... gi\|49525925 - gi\|49525925\|emb\|CAG59544.1\| unnamed protein product [Candida glabrata]	108.0	[0..1]	[70..1]
gi\|50306889, gi\|... - gi\|50306889\|ref\|XP_453420.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642554\|emb\|CAH0051... gi\|49642554 - gi\|49642554\|emb\|CAH00516.1\| KLLA0D08008p [Kluyveromyces lactis]	97.0	[0..1]	[70..1]
gi\|8248885 - gi\|8248885\|gb\|AAB27565.2\| metallothionein-I gene transcription activator [Mus sp.]	95.0	[0..23]	[70..58]
gi\|26359970, gi\|... - gi\|86355514\|ref\|NP_001034457.1\| polymerase (RNA) II (DNA directed) polypeptide K isoform a [Mus musc...	93.0	[0..23]	[70..52]
rpb-12 - RNA polymerases I, II and III shared polypeptide (approx 7kd) status:Confirmed UniProt:Q9U3I0 protei...	91.0	[0..18]	[70..10]
gi\|44984495, gi\|... - gi\|45198544\|ref\|NP_985573.1\| AFR026Cp [Ashbya gossypii ATCC 10895], gi\|44984495\|gb\|AAS53397.1\| AFR02... gi\|44984495 - gi\|44984495\|gb\|AAS53397.1\| AFR026Cp [Ashbya gossypii ATCC 10895]	91.0	[0..1]	[70..1]
gi\|25396844, gi\|... - gi\|4583672\|emb\|CAB40410.1\| DNA-directed RNA polymerases I, II and III [Guillardia theta], pir\|\|C9010...	90.0	[0..11]	[70..11]
gi\|157755303 - gi\|157755303\|ref\|XP_001669995.1\| Hypothetical protein CBG21781 [Caenorhabditis briggsae AF16] gi\|187022348, gi... - gi\|39586459\|emb\|CAE74118.1\| Hypothetical protein CBG21781 [Caenorhabditis briggsae], gi\|187022348\|em...	90.0	[0..18]	[70..10]
gi\|46436658, gi\|... - gi\|68482071\|ref\|XP_715053.1\| hypothetical protein CaO19.7255 [Candida albicans SC5314], gi\|46436658\|... orf19.7255 - RPC10 CGDID:CAL0003902 Assembly 19, Contig19-2507 (86334, 86642) CDS, translated using codon table 1...	88.0	[0..3]	[70..35]
gi\|115653155, gi... - gi\|115946461\|ref\|XP_001187419.1\| PREDICTED: similar to MGC79127 protein [Strongylocentrotus purpurat...	88.0	[0..14]	[70..9]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSREGFQIPT NLDAAAAGTS QARTATLKYI CAECSSKLSL SRTDAVRCKD CGHRILLKAR  60
   61 TKRLVQFEAR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.646	a.39.1	EF-hand
View	Download	0.618	g.3.7	Scorpion toxin-like
View	Download	0.578	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.573	b.122.1	PUA domain-like
View	Download	0.555	b.122.1	PUA domain-like
View	Download	0.540	d.145.1	FAD-binding domain
View	Download	0.515	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.483	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.478	g.14.1	Kringle-like
View	Download	0.474	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.372	a.159.5	Description not found.
View	Download	0.367	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.355	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.332	a.4.1	Homeodomain-like
View	Download	0.290	b.1.24	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits