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Protein Overview: rpb-12

General Information:
Name(s) found: rpb-12 / CE20710 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00009078 locus:rpb-12 status:Confirmed UniProt:Q9U3I0 protein_id:CAB51465.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 62 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    DNA-directed RNA polymerase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSATPGPG QAHLKSNSMI YICGECHAEN EIKPKDAIRC RECGYRILYK KRCRKLMVYD  60
   61 AR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] PSI-BLAST 17.69897 RBP12 subunit of RNA polymerase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.35451546352053 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.35451546352053 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  5.81678585382781 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.83767817856073 bayes_pls_golite062009
  • transferase activity
    		•  3.42925067497401 bayes_pls_golite062009
  • binding
    		•  1.92877642905827 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • protein binding
    		•  0.404450175883241 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle