| Protein: | SFB3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 929 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFB3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..929] | [1..929] |
|
|
0.0 | [3..905] | [160..1031] |
|
|
0.0 | [10..905] | [224..1096] |
|
|
0.0 | [10..905] | [223..1121] |
|
|
0.0 | [160..899] | [9..760] |
|
Region A: Residues: [1-175] |
1 11 21 31 41 51
| | | | | |
1 MSQQNILAAS VSALSLDEST VHTGGASSKK SRRPHRAYHN FSSGTVPTLG NSPYTTPQLN 60
61 QQDGFQQPQA FTPKQFGGFN NGSGSVMSTP VMVSQERFGA SEASSPYGQS MLDMTAPQPT 120
121 SHIVPTQRFE DQAQYLQRSF ETCRDSVPPL PTTQFYCVDQ GSCDPHLMSL SMYNI
|
| Detection Method: |  |
| Confidence: | 3.69897 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.9315281375853 | bayes_pls_golite062009 |
| binding | 1.90456497151578 | bayes_pls_golite062009 |
| transporter activity | 1.30184925420876 | bayes_pls_golite062009 |
| collagen binding | 0.568860931913098 | bayes_pls_golite062009 |
| integrin binding | 0.56855067092085 | bayes_pls_golite062009 |
| nucleic acid binding | 0.464562340940318 | bayes_pls_golite062009 |
| protein complex binding | 0.35582708645524 | bayes_pls_golite062009 |
| DNA binding | 0.155617838235236 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.0661625326929309 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.027305897174472 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0179622467180781 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.0153681945260867 | bayes_pls_golite062009 |
|
Region A: Residues: [176-332] |
1 11 21 31 41 51
| | | | | |
1 PESEHLRAAT KLPLGLTIQP FSTLTPNDAE VPTIPLPMDG TPLRCRRCRA YANPKFQFTY 60
61 DSSVICNICR VKMQVPGEHF APMGPNGQRS DLNEKSELLH GTVDFLVPSI YNAIQEKELL 120
121 PLHYVFLIDV SLLANENGSS LAMVEGVRSC IEYISDF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [333-650] |
1 11 21 31 41 51
| | | | | |
1 QPNCEVAIIV YDNKLRFFNL RPDLDNAQEY IVSELDDVFL PFYNGLFVKP GNSMKIINDT 60
61 LIKISGYIST DKYSHVPQVC YGSALQAAKL ALDTVTGGQG GKIICSLNSL PTIGNGNLSL 120
121 KRDNAHIAHV KCDNGFYKKL ASDFLKSYIS LDLYVTNAGF IDMATVGHPV EMTSGILKYY 180
181 PHFQQETDAF TLVNDMVTNV SNIVGYQALL KVRCSTGLSV EQYYCDSSDN TDHDPIIPVL 240
241 TRDTTLDVLL KYDSKIKTGT DVHFQTALLY TDIDGVRKVR SINTSGAVSN NIREIFKFIN 300
301 QNPVMRIMIK DVIKTLGD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [651-707] |
1 11 21 31 41 51
| | | | | |
1 CDFVKIRRLI DDKMVEILTQ YRGLVSSNSS TQLILPDSIK TLPAYMLAFE KSELMKP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.719 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.698 | a.30.1 | ROP protein |
| View | Download | 0.603 | a.2.7 | tRNA-binding arm |
| View | Download | 0.490 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.473 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.453 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.425 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.414 | a.4.1 | Homeodomain-like |
| View | Download | 0.379 | a.74.1 | Cyclin-like |
| View | Download | 0.373 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.363 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.342 | a.161.1 | beta-catenin-interacting protein ICAT |
| View | Download | 0.322 | a.112.1 | Description not found. |
| View | Download | 0.321 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.315 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.313 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.285 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.277 | a.112.1 | Description not found. |
| View | Download | 0.273 | a.140.1 | LEM domain |
| View | Download | 0.260 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.258 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.256 | a.4.1 | Homeodomain-like |
| View | Download | 0.253 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.252 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.250 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.249 | g.53.1 | TAZ domain |
| View | Download | 0.246 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.230 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.227 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.225 | d.59.1 | Ribosomal protein L30p/L7e |
| View | Download | 0.222 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.219 | d.58.49 | YajQ-like |
| View | Download | 0.215 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.209 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.208 | d.201.1 | SRP19 |
| View | Download | 0.207 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.206 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.203 | a.46.1 | Methionine synthase domain |
| View | Download | 0.202 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
|
Region A: Residues: [708-929] |
1 11 21 31 41 51
| | | | | |
1 NAQSTRGNER IYDLLKYDSL NSAQLCYKLY PQIVPFHVLL EETDLTFYDA NDKLLQINSS 60
61 SINNLSVRAS HSNFINGGCY LIFQGDTIYL WFNENTNRML LQDLLSVDES LPVSQISLFS 120
121 GTLPETGTSI NQKASNVIKN WQQVVNKSSL PLVLLRPNVD QYYSNVMSQL LCEDKTVNRI 180
181 ESYDNYLVIM HKKIQEKLQK DDFIKVSTAA THENIHQKFV QF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
