YRC Public Data Repository - Protein Structure Prediction

Protein:	GAR1
Organism:	Saccharomyces cerevisiae
Length:	205 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAR1.

Description	E-value	Query Range	Subject Range
gi\|123994963, gi... - gi\|157928874\|gb\|ABW03722.1\| nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs) [synth... GAR1 - GAR1 ribonucleoprotein homolog (yeast)	3.0E-46	[4..132]	[37..168]
GAR1_YEAST - H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|151944037 - gi\|151944037\|gb\|EDN62330.1\| small nucleolar RNP protein [Saccharomyces cerevisiae YJM789] GAR1 - Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and clea...	7.0E-46	[1..152]	[1..152]
GAR1_MOUSE - H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=1 SV=1	1.0E-44	[2..132]	[40..179]
CG4038-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4038 (CG4038, FBgn0011824). It is a protein...	2.0E-42	[4..139]	[36..166]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-41	[4..139]	[34..164]
GAR1_SCHPO - H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... gar1 - snoRNP pseudouridylase complex protein Gar1	6.0E-41	[1..138]	[1..131]
NLAL2_ARATH - H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 S...	6.0E-36	[2..127]	[9..135]
GAR1_ENCCU - H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon cuniculi GN=GAR1 PE=3 SV=1 GAR1_ENCCU - H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=GAR1 PE=3 SV...	1.0E-31	[36..153]	[28..152]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGNRGG RGGFRGGFRG GRTGSARSFQ QGPPDTVLEM GAFLHPCEGD IVCRSINTKI  60
   61 PYFNAPIYLE NKTQVGKVDE ILGPLNEVFF TIKCGDGVQA TSFKEGDKFY IAADKLLPIE 120
  121 RFLPKPKVVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [131-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPKPKNKKKR SGAPGGRGGA SMGRGGSRGG FRGGRGGSSF RGGRGGSSFR GGSRGGSFRG  60
   61 GSRGGSRGGF RGGRR

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.4
Match:	1la5A
Description:	No description for 1la5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits