YRC Public Data Repository - Protein Structure Prediction

Protein:	LRP1
Organism:	Saccharomyces cerevisiae
Length:	184 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRP1.

Description	E-value	Query Range	Subject Range
gi\|157434741, gi... - gi\|71072738\|ref\|XP_768923.1\| hypothetical protein GLP_231_36904_35954 [Giardia lamblia ATCC 50803], ... gi\|13752401 - gi\|13752401\|gb\|AAK38640.1\|AF331828_2 protein 21.2 [Giardia intestinalis] GL50803_13437 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=Protein 21.1 \| location=GLCHR04:1293062-1294012...	196.0	[0..24]	[171..62]
gi\|49643851 - gi\|49643851\|emb\|CAG99803.1\| KLLA0E17007p [Kluyveromyces lactis] gi\|50309417, gi\|... - gi\|50309417\|ref\|XP_454716.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643851\|emb\|CAG9980...	101.0	[0..1]	[179..1]
gi\|44983015, gi\|... - gi\|45188171\|ref\|NP_984394.1\| ADR297Wp [Ashbya gossypii ATCC 10895], gi\|44983015\|gb\|AAS52218.1\| ADR29... gi\|44983015 - gi\|44983015\|gb\|AAS52218.1\| ADR297Wp [Ashbya gossypii ATCC 10895]	89.0	[0..1]	[152..1]
gi\|50425765, gi\|... - gi\|50425765\|ref\|XP_461479.1\| hypothetical protein DEHA0F27797g [Debaryomyces hansenii CBS767], gi\|49...	76.0	[0..1]	[178..1]
gi\|49525420, gi\|... - gi\|50287367\|ref\|XP_446113.1\| unnamed protein product [Candida glabrata], gi\|49525420\|emb\|CAG59037.1\|... gi\|49525420 - gi\|49525420\|emb\|CAG59037.1\| unnamed protein product [Candida glabrata]	60.0	[0..2]	[143..3]
gi\|68476625, gi\|... - gi\|68476772\|ref\|XP_717531.1\| potential nuclear exosome component Lrp1p [Candida albicans SC5314], gi... orf19.5067, orf1... - orf19.5067 CGDID:CAL0001724 Assembly 19, Contig19-10218 (32641, 33339) CDS, translated using codon t...	53.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIEKIKPY VRSFSKALDE LKPEIEKLTS KSLDEQLLLL SDERAKLELI NRYAYVLSSL  60
   61 MFANMKVLGV KDMSPILGEL KRVKSYMDKA KQYDNRITKS NEKSQAEQEK AKNIISNVLD 120
  121 GNKNQFEPSI SRSNFQGKHT KFENDELAES TTTKIIDSTD HIRKASSKKS KRLDKVGKKK 180
  181 GGKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits