| Protein: | YHR080C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1345 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR080C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1345] | [1..1345] |
|
|
0.0 | [532..965] | [1..506] |
|
|
0.0 | [532..964] | [1..506] |
|
|
2.0E-95 | [460..924] | [112..592] |
|
|
5.0E-91 | [377..893] | [2..547] |
|
Region A: Residues: [1-546] |
1 11 21 31 41 51
| | | | | |
1 MTRDSKKKHH WGTAFLRTIG VKRKHKKDRN FLNNTTGENV STTASAERFR RVGGNPDIPS 60
61 LLKPETFTES PAKGSQKAAA SSLAHSQGVF NIPIVIDPME TNRLEKTNTN LTAGSLKGRF 120
121 QDGNSNSNSV PSLSVQALEK EKLQSGKREG SSNQAEEKTP DGHDEHTAFE TFLSFAHNAV 180
181 SHIPKINVQD ADNGTISRNE PKDRKKNSSN ISGALSENST NNKNTSSTKE SDGPFLKNLD 240
241 NILAASKSST PSNQQLNTTE AGSKSKPSSL SRLAFGNLKG HIHSNSHSSS NAISGDDTSL 300
301 DDTRKMTDDM ARKVVFEPIR HSHDKPTPGV GNLKLEHFDD SQATLEGLEA MSAESLPEAD 360
361 HLDSRGPVQQ SNLERKTVPS KWSVVSSSTT DGVKPRRRAK SMISAMADKQ NTSSDVLQDC 420
421 KKRLSFNSSN GLTNNDPEYE DREPREMSKK FLNRRSFSPG SISMGMKVLP STALKYSLNK 480
481 VKNSTDIAST IIPRPSMSNG RPSSGLRRSS SKSFSSTPVN IIEPSEENGR QSSIRIKGVE 540
541 YASEKK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [547-664] |
1 11 21 31 41 51
| | | | | |
1 DAEFHAIFKD SGVSPNERLI LDHSCALSRD ILLQGRMYIS DQHIGFYSNI LGWVSTVFIP 60
61 FKTIVQIEKR ATAGIFPNGI VIDTLHTKYT FASFTSRDAT YDLITEVWNQ IILGKRFR
|
| Detection Method: | |
| Confidence: | 24.585027 |
| Match: | PF02893 |
| Description: | GRAM domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [665-957] |
1 11 21 31 41 51
| | | | | |
1 SNSNNTNSSS NSISDDENDD YDDDYDDYGD DDDDLYDNSN NISDSTDMTS SVSIGKPEDL 60
61 PMPLQTDTPY GTGIPPLGPK IHSPTETVYK PAPNEKLVNE STIHASLGRV VNILFGKDVS 120
121 YIMAILKAQK NSDISPIPVL VDSPTVSEGK KRDYSYVKTT PGAIGPGKTK CMITETIQHF 180
181 NLEEYVQVLQ TTKTPDVPSG NSFYVRTVYL LSWANNNETK LKLYVSVEWT GKSLIKSPIE 240
241 KGTFDGVTDA TKILVEELGN ILTRSATKRK RSSKENTVTV STLPKMEPSS HAP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.758 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.752 | N/A | N/A | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.722 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.712 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.698 | N/A | N/A | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
|
Region A: Residues: [958-1038] |
1 11 21 31 41 51
| | | | | |
1 TEPDIQKDKD DSIIRENENI PAPLGTVVQL LFGSNTEYMQ KVITRDKNNV NVETIPKFTP 60
61 SLVEGGSRHY EYTKKLNNSI G
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.326 | d.15.1 | Ubiquitin-like |
| View | Download | 0.308 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.382 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.402 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.306 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.298 | d.45.1 | ClpS-like |
| View | Download | 0.294 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.263 | a.77.1 | DEATH domain |
| View | Download | 0.253 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.242 | a.65.1 | Annexin |
| View | Download | 0.234 | a.4.1 | Homeodomain-like |
| View | Download | 0.228 | a.4.1 | Homeodomain-like |
| View | Download | 0.226 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.216 | a.77.1 | DEATH domain |
| View | Download | 0.215 | c.30.1 | PreATP-grasp domain |
| View | Download | 0.202 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
|
Region A: Residues: [1039-1345] |
1 11 21 31 41 51
| | | | | |
1 PKQTKCLLTE SIEHMDINNY VLVTQTTKTP DVPSGSNFAV ESKIFLFWGQ HDTTNMTVIT 60
61 KINWTSKSFL KGAIEKGSVE GQKVSVDYML SELRDIISRA KSKKPVKKVM KSHDKHRPFH 120
121 SKVEQKSSES RKSDDNKDIL THILDFVQNN FSSEIFMNKL LSPQKLFLIL GLTIMLFWSP 180
181 RLHVFQEKNN LQIIKPGRLL IDGQEYNYVP SFGTLYNSYE NAISSKKKRE NVNYARDKSP 240
241 IVGRESDIWD WISNRGSAIS PRGRAMLRND DEHKLQQLSE SIKITEMQLN HMKTMLDNIE 300
301 RDANDLS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [958-1040] |
1 11 21 31 41 51
| | | | | |
1 TEPDIQKDKD DSIIRENENI PAPLGTVVQL LFGSNTEYMQ KVITRDKNNV NVETIPKFTP 60
61 SLVEGGSRHY EYTKKLNNSI GPK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.402 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.382 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.326 | d.15.1 | Ubiquitin-like |
| View | Download | 0.308 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.307 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [1041-1226] |
1 11 21 31 41 51
| | | | | |
1 QTKCLLTESI EHMDINNYVL VTQTTKTPDV PSGSNFAVES KIFLFWGQHD TTNMTVITKI 60
61 NWTSKSFLKG AIEKGSVEGQ KVSVDYMLSE LRDIISRAKS KKPVKKVMKS HDKHRPFHSK 120
121 VEQKSSESRK SDDNKDILTH ILDFVQNNFS SEIFMNKLLS PQKLFLILGL TIMLFWSPRL 180
181 HVFQEK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1227-1345] |
1 11 21 31 41 51
| | | | | |
1 NNLQIIKPGR LLIDGQEYNY VPSFGTLYNS YENAISSKKK RENVNYARDK SPIVGRESDI 60
61 WDWISNRGSA ISPRGRAMLR NDDEHKLQQL SESIKITEMQ LNHMKTMLDN IERDANDLS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
