| Protein: | RRP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 543 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..500] | [64..578] |
|
|
0.0 | [2..497] | [64..575] |
|
|
0.0 | [2..497] | [64..575] |
|
|
0.0 | [10..508] | [57..576] |
|
|
0.0 | [12..500] | [109..619] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MKNLKLINEH LAIVHGIHRI VTYLRSNIYQ DSVKYFTESA IKMSKIVKRK EKKANDELTS 60
61 LAEKIRAKAL ENQKKLIEAE KEGGSESDSE EDATAEKKKV LKSKSKSTVS TQNE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [115-333] |
1 11 21 31 41 51
| | | | | |
1 NTNEDESFES FSELNLVPEL IQACKNLNYS KPTPIQSKAI PPALEGHDII GLAQTGSGKT 60
61 AAFAIPILNR LWHDQEPYYA CILAPTRELA QQIKETFDSL GSLMGVRSTC IVGGMNMMDQ 120
121 ARDLMRKPHI IIATPGRLMD HLENTKGFSL RKLKFLVMDE ADRLLDMEFG PVLDRILKII 180
181 PTQERTTYLF SATMTSKIDK LQRASLTNPV KCAVSNKYQ
|
| Detection Method: | |
| Confidence: | 619.457575 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [334-543] |
1 11 21 31 41 51
| | | | | |
1 TVDTLVQTLM VVPGGLKNTY LIYLLNEFIG KTMIIFTRTK ANAERLSGLC NLLEFSATAL 60
61 HGDLNQNQRM GSLDLFKAGK RSILVATDVA ARGLDIPSVD IVVNYDIPVD SKSYIHRVGR 120
121 TARAGRSGKS ISLVSQYDLE LILRIEEVLG KKLPKESVDK NIILTLRDSV DKANGEVVME 180
181 MNRRNKEKIA RGKGRRGRMM TRENMDMGER
|
| Detection Method: | |
| Confidence: | 619.457575 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
