| Protein: | RRP3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 543 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP3.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [2..500] | [64..578] |
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0.0 | [2..497] | [64..575] |
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0.0 | [2..497] | [64..575] |
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0.0 | [10..508] | [57..576] |
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0.0 | [12..500] | [109..619] |
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Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MKNLKLINEH LAIVHGIHRI VTYLRSNIYQ DSVKYFTESA IKMSKIVKRK EKKANDELTS 60
61 LAEKIRAKAL ENQKKLIEAE KEGGSESDSE EDATAEKKKV LKSKSKSTVS TQNE
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| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.667 | a.47.2 | t-snare proteins |
| View | Download | 0.672 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.706 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.791 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.684 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.660 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.597 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.591 | a.24.4 | Hemerythrin |
| View | Download | 0.582 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.578 | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.565 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.562 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.560 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.498 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.497 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.492 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.489 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.469 | a.118.8 | TPR-like |
| View | Download | 0.455 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.451 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.436 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.402 | a.46.1 | Methionine synthase domain |
| View | Download | 0.398 | b.88.1 | Mss4-like |
| View | Download | 0.394 | a.25.1 | Ferritin-like |
| View | Download | 0.394 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.392 | g.45.1 | Pyk2-associated protein beta ARF-GAP domain |
| View | Download | 0.369 | a.118.8 | TPR-like |
| View | Download | 0.367 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.362 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.342 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.340 | a.7.7 | BAG domain |
| View | Download | 0.335 | a.74.1 | Cyclin-like |
| View | Download | 0.333 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.329 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.329 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.327 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.319 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.307 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.300 | a.2.7 | tRNA-binding arm |
| View | Download | 0.295 | a.24.3 | Cytochromes |
| View | Download | 0.294 | a.4.1 | Homeodomain-like |
| View | Download | 0.285 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.280 | a.7.1 | Spectrin repeat |
| View | Download | 0.280 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.274 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.274 | a.118.1 | ARM repeat |
| View | Download | 0.274 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.268 | a.24.3 | Cytochromes |
| View | Download | 0.264 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.262 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.261 | a.24.3 | Cytochromes |
| View | Download | 0.260 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.258 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.255 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.251 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.245 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.240 | d.123.1 | Sporulation responce regulatory protein Spo0B |
| View | Download | 0.234 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.232 | a.74.1 | Cyclin-like |
| View | Download | 0.219 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.215 | a.2.5 | Prefoldin |
| View | Download | 0.215 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.214 | a.7.8 | GAT domain |
| View | Download | 0.210 | a.24.3 | Cytochromes |
| View | Download | 0.209 | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.208 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.208 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.204 | d.79.5 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |
| View | Download | 0.202 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.201 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
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Region A: Residues: [115-333] |
1 11 21 31 41 51
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1 NTNEDESFES FSELNLVPEL IQACKNLNYS KPTPIQSKAI PPALEGHDII GLAQTGSGKT 60
61 AAFAIPILNR LWHDQEPYYA CILAPTRELA QQIKETFDSL GSLMGVRSTC IVGGMNMMDQ 120
121 ARDLMRKPHI IIATPGRLMD HLENTKGFSL RKLKFLVMDE ADRLLDMEFG PVLDRILKII 180
181 PTQERTTYLF SATMTSKIDK LQRASLTNPV KCAVSNKYQ
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| Detection Method: | |
| Confidence: | 619.457575 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [334-543] |
1 11 21 31 41 51
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1 TVDTLVQTLM VVPGGLKNTY LIYLLNEFIG KTMIIFTRTK ANAERLSGLC NLLEFSATAL 60
61 HGDLNQNQRM GSLDLFKAGK RSILVATDVA ARGLDIPSVD IVVNYDIPVD SKSYIHRVGR 120
121 TARAGRSGKS ISLVSQYDLE LILRIEEVLG KKLPKESVDK NIILTLRDSV DKANGEVVME 180
181 MNRRNKEKIA RGKGRRGRMM TRENMDMGER
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| Detection Method: | |
| Confidence: | 619.457575 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
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