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View Structure Prediction Details

Protein: YHR035W
Organism: Saccharomyces cerevisiae
Length: 630 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHR035W.

Description E-value Query
Range
Subject
Range
gi|7271162 - gi|7271162|emb|CAB81549.1| putative Sec23 protein [Drosophila melanogaster]
0.0 [1..629] [34..766]
SEC23B - Sec23 homolog B (S. cerevisiae)
0.0 [1..629] [34..764]
gi|13365827 - gi|13365827|dbj|BAB39299.1| hypothetical protein [Macaca fascicularis]
0.0 [1..629] [34..764]
SC23B_MOUSE - Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=1 SV=1
gi|126035610 - gi|126035610|gb|ABN72531.1| SEC23B [Mus spretus]
0.0 [1..629] [34..764]
SEC23_NEUCR - Protein transport protein sec-23 OS=Neurospora crassa GN=sec-23 PE=3 SV=1
SEC23_NEUCR - Protein transport protein sec23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / ...
0.0 [1..629] [36..772]
gi|15229489, gi|... - gi|9294523|dbj|BAB02785.1| protein transport protein Sec23 [Arabidopsis thaliana], gi|28827624|gb|AA...
0.0 [2..628] [33..763]
sec-23 - status:Confirmed UniProt:Q9U2Z1 protein_id:CAB60476.2
0.0 [1..622] [34..811]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSPTNFLYE PFSSDAVTQN YDQNLKCTKC GAYYSMACSL REQNVWTCLF CNQSNS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [57-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAELPLVPSN TYTLTSAKKE ILSRRTIMII DAICDPHELN YLVSILCNNY ITRQQEPLSI  60
   61 ITIQQSGHVI LHNAVNHRRD AVF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [140-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SINEFMTKYN LDKLNASYFE KKISEINQES YWFDKSTQGS LRKLLREICK IANKVNISSK  60
   61 RDKRCTGLAL FVSSVLASQC SLSAYCHIVS FLNGPCTKGG GKVMSRERGE SMRQNHHFES 120
  121 KSSQLQLSKS PTKFYKKMLE KFANQSLIYE FFIASLDQIG ILEMSPLITS SMAVSQFDSF 180
  181 NDERFAMSFQ KYLNLRDHNA IYNCHSKIMT AKNAIVVKDF PKYSLNPKNL SLPLEISLGH 240
  241 NSAEAPIQFQ TTFENQTEKY IRIETLLLPK ANRSFGAQNE IVFSMKKIAS RIIDSFAYSS 300
  301 KHTKELMKQL FLLPNQIRGK DVDMVNLIQW CYHIYRSPIL SV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [482-630]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNTSPDERYL FLHRIINASK DTCLSLCKPF IWSYSDLKHD WIVLDVPLTR AQILQDDKTT  60
   61 ICVDGGSYLV LRRGKLLEKE GRELCCKLLN DLQRFPQPLY VETKTGGSQD RFLKSKIIPL 120
  121 DITDKETLGT EDMTFNEYFN LFTDLSGSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.69897
Match: 1svy__
Description: Severin, domain 2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle