| Protein: | VPS29 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 282 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS29.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-74 | [1..282] | [1..282] |
|
|
1.0E-45 | [1..252] | [4..296] |
|
|
2.0E-45 | [1..252] | [4..296] |
|
|
6.0E-45 | [1..252] | [1..293] |
|
|
2.0E-34 | [1..197] | [1..182] |
|
|
2.0E-34 | [1..196] | [1..226] |
|
|
2.0E-34 | [1..197] | [1..182] |
|
Region A: Residues: [1-222] |
1 11 21 31 41 51
| | | | | |
1 MLLLALSDAH IPDRATDLPV KFKKLLSVPD KISQVALLGN STKSYDFLKF VNQISNNITI 60
61 VRGEFDNGHL PSTKKDKASD NSRPMEEIPM NSIIRQGALK IGCCSGYTVV PKNDPLSLLA 120
121 LARQLDVDIL LWGGTHNVEA YTLEGKFFVN PGSCTGAFNT DWPIVFDVED SDEAVTSEVD 180
181 KPTKENQSED DDAKGGSTGK EQPGSYTPKE GTAGERENEN ES
|
| Detection Method: |  |
| Confidence: | 13.221849 |
| Match: | 1ii7A_ |
| Description: | Mre11 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 2.15398287574737 | bayes_pls_golite062009 |
| protein transporter activity | 1.31841400137462 | bayes_pls_golite062009 |
| transporter activity | 1.24767072239634 | bayes_pls_golite062009 |
| phosphoric ester hydrolase activity | 1.23826159413064 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.13357344565764 | bayes_pls_golite062009 |
| protein serine/threonine phosphatase activity | 1.09206313505563 | bayes_pls_golite062009 |
| phosphatase activity | 1.08894272596476 | bayes_pls_golite062009 |
| binding | 1.0086165150304 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.783004917746429 | bayes_pls_golite062009 |
| phosphoprotein phosphatase activity | 0.521298686118866 | bayes_pls_golite062009 |
| protein binding | 0.306836734324834 | bayes_pls_golite062009 |
|
Region A: Residues: [223-282] |
1 11 21 31 41 51
| | | | | |
1 NVKPENQFKE DEVDMSDSDI NGSNSPSFCL LDIQGNTCTL YIYLYVNGEV KVDKVVYEKE 60
61
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.780 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.752 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.551 | b.122.1 | PUA domain-like |
| View | Download | 0.941 | b.122.1 | PUA domain-like |
| View | Download | 0.777 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
| View | Download | 0.941 | b.122.1 | PUA domain-like |
| View | Download | 0.777 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
| View | Download | 0.763 | b.122.1 | PUA domain-like |
| View | Download | 0.763 | b.122.1 | PUA domain-like |
| View | Download | 0.752 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.747 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.730 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.722 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.707 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.688 | b.49.1 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.648 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.643 | g.27.1 | Fibronectin type I module |
| View | Download | 0.627 | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.625 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.603 | b.1.18 | E set domains |
| View | Download | 0.592 | g.27.1 | Fibronectin type I module |
| View | Download | 0.582 | g.27.1 | Fibronectin type I module |
| View | Download | 0.579 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.560 | b.122.1 | PUA domain-like |
| View | Download | 0.557 | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.555 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.537 | d.37.1 | CBS-domain |
| View | Download | 0.536 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.533 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.531 | d.93.1 | SH2 domain |
| View | Download | 0.527 | d.9.2 | Description not found. |
| View | Download | 0.520 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.508 | b.122.1 | PUA domain-like |
| View | Download | 0.508 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.502 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.481 | b.122.1 | PUA domain-like |
| View | Download | 0.462 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.455 | g.27.1 | Fibronectin type I module |
| View | Download | 0.447 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.434 | b.122.1 | PUA domain-like |
| View | Download | 0.421 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.414 | g.27.1 | Fibronectin type I module |
| View | Download | 0.404 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.402 | d.93.1 | SH2 domain |
| View | Download | 0.399 | g.27.1 | Fibronectin type I module |
| View | Download | 0.395 | d.93.1 | SH2 domain |
| View | Download | 0.392 | g.27.1 | Fibronectin type I module |
| View | Download | 0.388 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.386 | g.27.1 | Fibronectin type I module |
| View | Download | 0.383 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.380 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.375 | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.365 | b.1.3 | PKD domain |
| View | Download | 0.362 | b.49.1 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.359 | b.122.1 | PUA domain-like |
| View | Download | 0.356 | g.27.1 | Fibronectin type I module |
| View | Download | 0.356 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.346 | g.27.1 | Fibronectin type I module |
| View | Download | 0.346 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.344 | d.17.5 | Uracil-DNA glycosylase inhibitor protein |
| View | Download | 0.341 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.338 | b.84.1 | Single hybrid motif |
| View | Download | 0.337 | d.93.1 | SH2 domain |
| View | Download | 0.328 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.326 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.320 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.319 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.313 | b.1.3 | PKD domain |
| View | Download | 0.311 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.308 | d.93.1 | SH2 domain |
| View | Download | 0.306 | b.1.1 | Immunoglobulin |
| View | Download | 0.294 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.292 | g.27.1 | Fibronectin type I module |
| View | Download | 0.288 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.286 | d.17.5 | Uracil-DNA glycosylase inhibitor protein |
| View | Download | 0.277 | d.17.5 | Uracil-DNA glycosylase inhibitor protein |
| View | Download | 0.269 | b.1.1 | Immunoglobulin |
| View | Download | 0.267 | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.267 | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.266 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.260 | d.93.1 | SH2 domain |
| View | Download | 0.258 | d.93.1 | SH2 domain |
| View | Download | 0.257 | d.93.1 | SH2 domain |
| View | Download | 0.251 | d.200.1 | Integrin beta tail domain |
| View | Download | 0.250 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.247 | b.1.18 | E set domains |
| View | Download | 0.247 | b.1.1 | Immunoglobulin |
| View | Download | 0.242 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.240 | b.1.2 | Fibronectin type III |
| View | Download | 0.239 | b.1.1 | Immunoglobulin |
| View | Download | 0.238 | b.34.11 | GW domain |
| View | Download | 0.236 | d.17.1 | Cystatin/monellin |
| View | Download | 0.227 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.226 | d.200.1 | Integrin beta tail domain |
| View | Download | 0.226 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.226 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.224 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.219 | b.1.1 | Immunoglobulin |
| View | Download | 0.218 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.218 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.218 | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.216 | b.1.2 | Fibronectin type III |
| View | Download | 0.216 | d.17.1 | Cystatin/monellin |
| View | Download | 0.209 | b.1.1 | Immunoglobulin |
| View | Download | 0.209 | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.207 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.201 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.200 | b.24.1 | Hyaluronate lyase-like, C-terminal domain |
