YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL27A
Organism:	Saccharomyces cerevisiae
Length:	136 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL27A.

Description	E-value	Query Range	Subject Range
RL27_BOVIN - 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2 RL27_CHICK - 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2 gi\|114667090, gi... - gi\|55645473\|ref\|XP_511528.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|1146670... RL27_MACFA - 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1 RL27_PIG - 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=1 SV=1 gi\|197129865, gi... - gi\|197129865\|gb\|ACH46363.1\| putative ribosomal protein L27 variant 1 [Taeniopygia guttata], gi\|19712... CCDS11449.1_1 - null gi\|542173856\|ref... - PREDICTED: 60S ribosomal protein L27 [Zonotrichia albicollis] gi\|123998207, gi... - gi\|60656393\|gb\|AAX32760.1\| ribosomal protein L27 [synthetic construct], gi\|123998207\|gb\|ABM86705.1\| ... ENSCJAT00000025389 - null gi\|109115555, gi... - gi\|109115555\|ref\|XP_001112717.1\| PREDICTED: similar to ribosomal protein L27 isoform 1 [Macaca mulat... gi\|149723745 - gi\|149723745\|ref\|XP_001492525.1\| PREDICTED: similar to ribosomal protein L27 [Equus caballus] ENSOCUP000000217... - pep:novel chromosome:oryCun2:12:4376635:4377045:1 gene:ENSOCUG00000024462 transcript:ENSOCUT00000027... RL27_RAT - 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2 RPL27 - ribosomal protein L27 RL27_MOUSE - 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=1 SV=2 RL27_CERNI - 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2	1.0E-54	[1..136]	[1..136]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	4.0E-54	[1..136]	[1..136]
RL27_ICTPU - 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3	1.0E-52	[1..136]	[1..136]
gi\|50978796, gi\|... - gi\|5441527\|emb\|CAB46818.1\| ribosomal protein L27 [Canis familiaris], gi\|50978796\|ref\|NP_001003102.1\|...	1.0E-51	[5..136]	[1..132]
gi\|11967855 - gi\|11967855\|emb\|CAC19490.1\| putative ribosomal protein L27 [Stichodactyla helianthus]	5.0E-50	[1..136]	[1..136]
rpl2702 - 60S ribosomal protein L27 RL27B_SCHPO - 60S ribosomal protein L27-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2702 PE=3 S...	7.0E-50	[1..136]	[1..136]
gi\|151942435, gi... - gi\|151943952\|gb\|EDN62245.1\| ribosomal protein L27A [Saccharomyces cerevisiae YJM789], gi\|151942435\|g... RPL27A - Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similari... gi\|190404606 - gi\|190404606\|gb\|EDV07873.1\| ribosomal protein L27B [Saccharomyces cerevisiae RM11-1a] RL27A_YEAST - 60S ribosomal protein L27-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL27A PE=1 ...	8.0E-48	[1..136]	[1..136]

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Predicted Domain #1

Region A:
Residues: [1-49]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFLKAGKV AVVVRGRYAG KKVVIVKPHD EGSKSHPFGH ALVAGIERY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.721246
Match:	PF00467
Description:	KOW motif

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.33175622373475	bayes_pls_golite062009
structural molecule activity	8.78104488316498	bayes_pls_golite062009
translation elongation factor activity	2.67300686401704	bayes_pls_golite062009
binding	1.53082494948413	bayes_pls_golite062009
RNA binding	1.34286989242843	bayes_pls_golite062009
nucleic acid binding	1.34250569976274	bayes_pls_golite062009
transcription regulator activity	1.24801565562229	bayes_pls_golite062009
DNA binding	0.817602006068725	bayes_pls_golite062009
protein binding	0.247509245072821	bayes_pls_golite062009
transcription factor activity	0.151888933180377	bayes_pls_golite062009
translation regulator activity	0.084754562593104	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.0564075582229911	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [50-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLKVTKKHGA KKVAKRTKIK PFIKVVNYNH LLPTRYTLDV EAFKSVVSTE TFEQPSQREE  60
   61 AKKVVKKAFE ERHQAGKNQW FFSKLRF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.585027
Match:	PF01777
Description:	Ribosomal L27e protein family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: