| Protein: | HSV2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 448 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSV2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [8..447] | [833..1255] |
|
|
0.0 | [2..448] | [1060..1490] |
|
Region A: Residues: [1-379] |
1 11 21 31 41 51
| | | | | |
1 MDVRRPIREA VNNRRKPKFL SVSFNQDDSC FSVALENGFR IFNTDPLTSK LSKTFKESAT 60
61 NQSRGTGIGY TRMLYRTNYI ALVGGGKRPR HALNKLIIWD DLLQKETITL KFMSSIKDVF 120
121 LSRIHIVVVL ENTIEIFQFQ TNPQRICPIL DIPPNGSVDY VVCSSKHLQS QASQSQSKIL 180
181 EIIAFPSNKC VGQIQVADLS QIKYNSQNPK ESALLPTSII KAHKNPIKLV RLNRQGTMVA 240
241 TCSVQGTLIR IFSTHNGTLI KEFRRGVDKA DIYEMSFSPN GSKLAVLSNK QTLHIFQIFE 300
301 TTNTETNTPD HSRANGSSHP LKNYIPKGLW RPKYLDSVWS ICNAHLKNPI FDAHRNDNSG 360
361 DVTHDNEFYK DRCRIGWCQ
|
| Detection Method: |  |
| Confidence: | 65.30103 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [380-448] |
1 11 21 31 41 51
| | | | | |
1 DSNNREQDDS LVLVWQNSGI WEKFVILEKE QQDSSKTHYS LNESLRNEDT KSAGEPTRWE 60
61 LVRESWREL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
