| Protein: | HSV2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 448 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSV2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [8..447] | [833..1255] |
|
|
0.0 | [2..448] | [1060..1490] |
|
Region A: Residues: [1-379] |
1 11 21 31 41 51
| | | | | |
1 MDVRRPIREA VNNRRKPKFL SVSFNQDDSC FSVALENGFR IFNTDPLTSK LSKTFKESAT 60
61 NQSRGTGIGY TRMLYRTNYI ALVGGGKRPR HALNKLIIWD DLLQKETITL KFMSSIKDVF 120
121 LSRIHIVVVL ENTIEIFQFQ TNPQRICPIL DIPPNGSVDY VVCSSKHLQS QASQSQSKIL 180
181 EIIAFPSNKC VGQIQVADLS QIKYNSQNPK ESALLPTSII KAHKNPIKLV RLNRQGTMVA 240
241 TCSVQGTLIR IFSTHNGTLI KEFRRGVDKA DIYEMSFSPN GSKLAVLSNK QTLHIFQIFE 300
301 TTNTETNTPD HSRANGSSHP LKNYIPKGLW RPKYLDSVWS ICNAHLKNPI FDAHRNDNSG 360
361 DVTHDNEFYK DRCRIGWCQ
|
| Detection Method: |  |
| Confidence: | 65.30103 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [380-448] |
1 11 21 31 41 51
| | | | | |
1 DSNNREQDDS LVLVWQNSGI WEKFVILEKE QQDSSKTHYS LNESLRNEDT KSAGEPTRWE 60
61 LVRESWREL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.737 | a.4.1 | Homeodomain-like |
| View | Download | 0.574 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.679 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.739 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.559 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.511 | a.7.7 | BAG domain |
| View | Download | 0.474 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.451 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.429 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.427 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.424 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.405 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.392 | d.58.17 | Metal-binding domain |
| View | Download | 0.388 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.371 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.359 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.354 | a.77.1 | DEATH domain |
| View | Download | 0.350 | a.159.2 | FF domain |
| View | Download | 0.344 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.335 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.320 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.310 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.309 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.296 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.290 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.290 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.290 | a.3.1 | Cytochrome c |
| View | Download | 0.289 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.282 | a.3.1 | Cytochrome c |
| View | Download | 0.273 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.272 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.268 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.262 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.257 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.257 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.254 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.245 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.243 | a.28.1 | ACP-like |
| View | Download | 0.237 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.236 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.231 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.225 | c.47.1 | Thioredoxin-like |
| View | Download | 0.220 | a.77.1 | DEATH domain |
| View | Download | 0.213 | a.4.1 | Homeodomain-like |
| View | Download | 0.207 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
