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View Structure Prediction Details

Protein: GTR2
Organism: Saccharomyces cerevisiae
Length: 341 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTR2.

Description E-value Query
Range		 Subject
Range
RRAGC_MOUSE - Ras-related GTP-binding protein C OS=Mus musculus GN=Rragc PE=1 SV=1
 2.0E-93 [8..325] [59..366]
ENSCJAT00000004312 - null
gi|123981662, gi... - gi|123996471|gb|ABM85837.1| Ras-related GTP binding C [synthetic construct], gi|123981662|gb|ABM8266...
RRAGC - Ras-related GTP binding C
 3.0E-93 [8..325] [60..367]
GTR2 - Putative GTP binding protein that negatively regulates Ran/Tc4 GTPase cycle; activates transcription...
gi|190406821 - gi|190406821|gb|EDV10088.1| GTP-binding protein GTR2 [Saccharomyces cerevisiae RM11-1a]
gi|207345042 - gi|207345042|gb|EDZ71989.1| YGR163Wp-like protein [Saccharomyces cerevisiae AWRI1631]
GTR2_YEAST - GTP-binding protein GTR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GTR2 PE=1 SV=1
gi|151943440 - gi|151943440|gb|EDN61751.1| GTP binding protein resemblance [Saccharomyces cerevisiae YJM789]
 4.0E-90 [1..341] [1..341]
GTR2_SCHPO - GTP-binding protein gtr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtr2 PE=3 SV=1
gtr2 - Gtr1 /RagA G protein Gtr2
 2.0E-78 [11..326] [5..311]
ragc-1 - status:Confirmed UniProt:Q9TVH6 protein_id:CAB60328.1
 5.0E-74 [3..325] [20..329]
ENSPTRT00000019157 - null
tr|G3I5Q9|G3I5Q9... - Ras-related protein Rab-11B OS=Cricetulus griseus GN=I79_018814 PE=3 SV=1
RB11B_RAT - Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=1 SV=4
gi|90085246 - gi|90085246|dbj|BAE91364.1| unnamed protein product [Macaca fascicularis]
gi|226529709, gi... - gi|226529709|ref|NP_001142168.1| hypothetical protein LOC100274335 [Zea mays], gi|194707448|gb|ACF87...
gi|61355645 - gi|61355645|gb|AAX41161.1| RAB11B member RAS oncogene family [synthetic construct]
RB11B_BOVIN - Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
CCDS12201.1_1 - null
gi|109123235 - gi|109123235|ref|XP_001093925.1| PREDICTED: RAB11B, member RAS oncogene family [Macaca mulatta]
RAB11B - RAB11B, member RAS oncogene family
 1.0E-68 [3..233] [5..217]
RB11D_LOTJA - Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
 2.0E-68 [3..232] [7..217]

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Predicted Domain #1
Region A:
Residues: [1-220] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEATDSKA MVLLMGVRRC GKSSICKVVF HNMQPLDTLY LESTSNPSLE HFSTLIDLAV  60
   61 MELPGQLNYF EPSYDSERLF KSVGALVYVI DSQDEYINAI TNLAMIIEYA YKVNPSINIE 120
  121 VLIHKVDGLS EDFKVDAQRD IMQRTGEELL ELGLDGVQVS FYLTSIFDHS IYEAFSRIVQ 180
  181 KLIPELSFLE NMLDNLIQHS KIEKAFLFDV NSKIYVSTDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.69897
Match: 1g17A_
Description: Rab-related protein Sec4
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [221-341] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPVDIQMYEV CSEFIDVTID LFDLYKAPVL RNSQKSSDKD NVINPRNELQ NVSQLANGVI  60
   61 IYLRQMIRGL ALVAIIRPNG TDMESCLTVA DYNIDIFKKG LEDIWANARA SQAKNSIEDD 120
  121 V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle