| Protein: | PTI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 425 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTI1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..425] | [1..425] |
|
|
0.008 | [264..345] | [140..218] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MTDPRRRTGR HFLTPENLSS TLQITNLPPE WNQDIITSVV AGSGPVIDIK AKNDPRTGKL 60
61 TGVLFDYLTS KDCKRAWEIL NRIENFPVKI EQIIPPNYKD HLR
|
| Detection Method: |  |
| Confidence: | 10.6 |
| Match: | 3sxlA |
| Description: | Sex-lethal protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [104-260] |
1 11 21 31 41 51
| | | | | |
1 ETANKNSQKQ VLQLNRDSYP FEAGLELPFE MVTEVPIPRR PPPPQAANNT NSVSNNTNIQ 60
61 FPDILSKASK HLPSFQDGSI IAPDKISQNL SKIPPLQLIE IISNLKILSN QENIQKSQLE 120
121 SFLDTNSDIT ISVTQALLEM GFIDYSVVTK VLKSQVG
|
| Detection Method: | |
| Confidence: | 10.6 |
| Match: | 3sxlA |
| Description: | Sex-lethal protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.74219150342477 | bayes_pls_golite062009 |
| nucleic acid binding | 4.23531598582972 | bayes_pls_golite062009 |
| binding | 4.00350364031155 | bayes_pls_golite062009 |
| mRNA binding | 3.63162433534903 | bayes_pls_golite062009 |
| 3.21905850396301 | bayes_pls_golite062009 | |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.74537942253096 | bayes_pls_golite062009 |
| protein binding | 1.26544376923141 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.19033433766236 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.08300488237934 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.960399311787502 | bayes_pls_golite062009 |
| ligase activity | 0.912895392833756 | bayes_pls_golite062009 |
| transcription factor activity | 0.894914712180715 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.633093884585572 | bayes_pls_golite062009 |
| snRNA binding | 0.448300421677168 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.238420044364247 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.229644510503376 | bayes_pls_golite062009 |
|
Region A: Residues: [261-425] |
1 11 21 31 41 51
| | | | | |
1 EAPSLLSSNN TSNSNTPVSV IRNNTPLHVP SNEVSNNPNN MPLNVAMPMP MSTPPFIPLP 60
61 LQQQPFGFAP PGPFMPPAQG PSMGQPVLAN QLGQVQQQNI SSTEGPSNAN KANDSGTINM 120
121 AKLQLLPENQ QDMIKQVLTL TPAQIQSLPS DQQLMVENFR KEYII
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
