| Protein: | NNF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 936 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NNF2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..936] | [1..936] |
|
|
3.0E-77 | [154..933] | [881..1670] |
|
|
3.0E-77 | [165..934] | [896..1668] |
|
|
7.0E-77 | [173..934] | [906..1670] |
|
|
1.0E-76 | [164..934] | [898..1671] |
|
Region A: Residues: [1-208] |
1 11 21 31 41 51
| | | | | |
1 MEEQFTNQKK VSHLQSLMNT KRSEQPTEFA KKHRFKDTLA LFLVFLSFNH FTSLCLLVSF 60
61 IVATKCKDFL ANCFIILFLS KKPSRHIGEV AHIDISTSKV TNGSSNRKSN SRFFGNSKNS 120
121 FVIPIPVLIC EILFAMLLKI YGGDYFVKPI KNLAISIIAS FLINDPSDCL SYATSCSVLY 180
181 AVSTNTFQRV SHFFDIIQLF DMSLRGTG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [209-589] |
1 11 21 31 41 51
| | | | | |
1 QSIKLFTVFR KYSQFFKKLF SLFLPMPFKM LGKHSDSMIY YLSFHILFFS FASSLLHPHR 60
61 QTAENKPLKK GFNSTKPDVA RVQGLQKMRI SSSSSVSADS NTLEDQSPMI PNDPGGLSSS 120
121 NQTIHPSQQN NSPVPLSSHS NILNPAASYP TDATSSFPYF TSMVKEYKSY QPSVISAEGS 180
181 NSQAVTTTTS TTTSPTTFNF SGDNTSLSNE ISLSDSSNGN SKKDSDFFSP SNDKYTNQLF 240
241 ELNVDFGNMF SSSKLSSDIS VTSNLENFIR LLFRRKNQHL IAPLWSMVVT LKTTNFEKKY 300
301 LQETSENSLT PTNSNTSYVS NQEKHDKDLD TINTHSVSSR ISFTHAGKFK KSVFNNFEPS 360
361 NTMALIAKTT SDDYNLLNLV S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [590-657] |
1 11 21 31 41 51
| | | | | |
1 TNENIFNRND NDYKVCIIDI STNSITFHIE NLHDGELIVL VNGVIWSEVS CALILEHVGE 60
61 EYVVVNGL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [658-711] |
1 11 21 31 41 51
| | | | | |
1 VPSCSYDIQF INRLNHRDDY LVSDLIVRTC GNNNAIAGKF ENLDFSFPSY YHRK
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.00940588691795 | bayes_pls_golite062009 |
| transcription regulator activity | 0.516346942965208 | bayes_pls_golite062009 |
| nucleic acid binding | 0.513833930010015 | bayes_pls_golite062009 |
| DNA binding | 0.475884563138359 | bayes_pls_golite062009 |
|
Region A: Residues: [712-789] |
1 11 21 31 41 51
| | | | | |
1 FLSPLLTLKH SVLTTNANLS DERTKLKKTK KEFSKKLSLL RQEIDYFKGR ISQNATHDEK 60
61 STLKVENLKV ALQQSETA
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [790-852] |
1 11 21 31 41 51
| | | | | |
1 VNKLEMQLKT LTEKELELEE EYLKKKDLHL KNQLEFSKLE ESLSKDLKNS EGRFQKVNQE 60
61 LVQ
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [853-936] |
1 11 21 31 41 51
| | | | | |
1 LGSKLDKLNA RNEKLQKEVD QNAEEIEKFS TQFLSKREKD RFRRKEYRIR EANKFELTIK 60
61 GLEQDINRLE NENENIHSLI GNSY
|
| Detection Method: | |
| Confidence: | 53.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
