| Protein: | GCD2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 651 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCD2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..651] | [1..651] |
|
|
0.0 | [49..574] | [2..509] |
|
|
0.0 | [49..574] | [2..507] |
|
|
1.0E-99 | [49..574] | [2..509] |
|
|
1.0E-98 | [57..574] | [30..529] |
|
|
2.0E-98 | [49..574] | [6..512] |
|
Region A: Residues: [1-354] |
1 11 21 31 41 51
| | | | | |
1 MSESEAKSRS ATPPSKAKQA TPTTTAAANG EKKLTNKELK ELKKQEKAAK RAAMKQANGI 60
61 SIEQQQQQAQ MKKEKKQLQR EQQQKREQKQ KNANKKKQNE RNVKKSTLFG HLETTEERRA 120
121 TILALTSAVS SPKTSRITAA GLMVPVVASA LSGSNVLTAS SLMPVGPNAS STVSASAPAS 180
181 TTTTLPASSA ALSAGTSSAS TNTPTAIQQE IASSNASDVA KTLASISLEA GEFNVIPGIS 240
241 SVIPTVLEQS FDNSSLISSV KELLLNKDLI HPSILLLTSH LAHYKIVGSI PRCIAMLEVF 300
301 QIVIKDYQTP KGTTLSRNLT SYLSHQIDLL KKARPLSVTM GNAIRWLKQE ISLI
|
| Detection Method: |  |
| Confidence: | 4.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [355-538] |
1 11 21 31 41 51
| | | | | |
1 DPSTPDKAAK KDLCEKIGQF AKEKIELADQ LIIDNASTQI EESTTIVTYG SSKVLTELLL 60
61 HNAISLKKNI KVIVVDSRPL FEGRKMAETL RNAGVNVMYA LITSLDTIFN MDVDYVFLGA 120
121 HSILSNGFLY SRAGTAMLAM SAKRRNIPVL VCCESLKFSQ RVQLDSVTFN ELADPNDLVN 180
181 IDYE
|
| Detection Method: | |
| Confidence: | 9.43 |
| Match: | 1m0sA |
| Description: | D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 10.1099993541596 | bayes_pls_golite062009 |
| translation regulator activity | 5.74669335554405 | bayes_pls_golite062009 |
| catalytic activity | 1.31732715713197 | bayes_pls_golite062009 |
| nucleic acid binding | 1.30647139421574 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.09424756417577 | bayes_pls_golite062009 |
| binding | 0.899200492696361 | bayes_pls_golite062009 |
| transcription regulator activity | 0.888163666064903 | bayes_pls_golite062009 |
| DNA binding | 0.593071187541606 | bayes_pls_golite062009 |
| protein binding | 0.0293610121675921 | bayes_pls_golite062009 |
| transcription factor activity | 0.0259936471063739 | bayes_pls_golite062009 |
|
Region A: Residues: [539-651] |
1 11 21 31 41 51
| | | | | |
1 NPVERRGNKG ALLNQFIKER KFEKKKLAME NKPKGNKIGG KKGSEGESKD ASNEEDSNSK 60
61 NILDGWQELP SLNIVNILYD LTPPEYIKKV ITEFGALPPS SVPVILREYK GSA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
