| Protein: | VHT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 593 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VHT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..593] | [1..593] |
|
|
3.0E-90 | [68..576] | [11..540] |
|
|
6.0E-88 | [122..583] | [21..502] |
|
|
4.0E-87 | [121..586] | [18..505] |
|
|
3.0E-84 | [125..584] | [24..505] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MTISNKSWRS YFPHLRKLPE DDQYLYSDDT NSSIIAEEEL HHSVDKSSKT DVTAETTAVE 60
61 PHPH
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.414 | a.4.1 | Homeodomain-like |
| View | Download | 0.274 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.299 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.293 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.272 | a.4.1 | Homeodomain-like |
| View | Download | 0.272 | d.58.49 | YajQ-like |
| View | Download | 0.270 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.247 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.247 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.242 | a.4.1 | Homeodomain-like |
| View | Download | 0.231 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.228 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.223 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.218 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.217 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.210 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.206 | a.4.1 | Homeodomain-like |
| View | Download | 0.205 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.203 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [65-593] |
1 11 21 31 41 51
| | | | | |
1 NLRHDLPYEV RDEAGRKWWK YFDEFEYRVN KEYKKSRKWY EFLYPNHTTQ TKAERRLLYK 60
61 LDIIIALYFF MLCWSKSVDL NNYTNAYVSN MKEDLNMKGN DYVYTSTIAN VGAIVFQLPF 120
121 MYLLPRFPSH IILPVMDLGW TWFTFACYRA NSLAELRAYR FILSAFGAAY YPVSQYILGC 180
181 WYAPDEINSR VCLFFCGQQL GSVTSGLLQS RIFKSLNGVH GLAGWRWMFL IDAIAISLPT 240
241 AIIGFFVIPG VPSKCYSLFL TDEEIRIARA RNKRNQIKDG VDKSKLAPLW SRKLWKKVFC 300
301 TPAFWVLVVF DTCSWNNMTA YSGSYTLWLK SNTKYSIAQV NNLSVIPACL GFAYVIFCAF 360
361 GADLFRCKWI FMVFAAIMNT VSCALLIKWD IPSKAKWYAF FTTYFSVAAS PCLWSFINDF 420
421 LRFDPQVKAI TWIAIYSFSQ STYAWIPTLA WPTVESPRFK TGYTVSLIFG AIYGLWTFVV 480
481 LFFYKRNEKK HALGNGIILY DSNKGEELPE FVKKNMEERD GYYYLKRSS
|
| Detection Method: | |
| Confidence: | 51.221849 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
| Term | Confidence | Notes |
| substrate-specific transmembrane transporter activity | 5.46247398538901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.58978526526921 | bayes_pls_golite062009 |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| anion transmembrane transporter activity | 3.94605227012838 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 3.88180006470231 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| inorganic anion transmembrane transporter activity | 2.52916479889426 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| binding | 0.873217664940684 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| phosphate transmembrane transporter activity | 0.312628600969375 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
