YRC Public Data Repository - Protein Structure Prediction

Protein:	SPT4
Organism:	Saccharomyces cerevisiae
Length:	102 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT4.

Description	E-value	Query Range	Subject Range
gi\|112362888 - gi\|112362888\|emb\|CAL35869.1\| SPT4 protein [Saccharomyces paradoxus] gi\|151943343 - gi\|151943343\|gb\|EDN61656.1\| RNA polymerase II elongation factor [Saccharomyces cerevisiae YJM789] SPT4_YEAST - Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT... SPT4 - Protein involved in the regulating Pol I and Pol II transcription, pre-mRNA processing, kinetochore ... gi\|190406914 - gi\|190406914\|gb\|EDV10181.1\| transcription elongation factor SPT4 [Saccharomyces cerevisiae RM11-1a]	1.0E-43	[1..102]	[1..102]
SPT4_KLULA - Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1 SPT4_KLULA - Transcription elongation factor SPT4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079...	3.0E-43	[1..102]	[1..102]
SPT4H_MACFA - Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1 gi\|167773609 - gi\|167773609\|gb\|ABZ92239.1\| suppressor of Ty 4 homolog 1 (S. cerevisiae) [synthetic construct] tr\|G1U0W2\|G1U0W2... - pep:novel chromosome:oryCun2:19:29917532:29924222:1 gene:ENSOCUG00000025823 transcript:ENSOCUT000000... ENSCJAT00000033815 - null SUPT4H1 - suppressor of Ty 4 homolog 1 (S. cerevisiae) gi\|73966584 - gi\|73966584\|ref\|XP_853156.1\| PREDICTED: similar to Transcription initiation protein SPT4 homolog 1 i... gi\|205361137, gi... - gi\|62656744\|ref\|XP_213415.3\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensi... SPT4H_BOVIN - Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1 gi\|109114496 - gi\|109114496\|ref\|XP_001106749.1\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB s... gi\|114669547, gi... - gi\|114669549\|ref\|XP_001172699.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... SPT4A_MOUSE - Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1 gi\|149723988 - gi\|149723988\|ref\|XP_001503750.1\| PREDICTED: similar to suppressor of Ty 4 homolog 1 [Equus caballus]	1.0E-36	[5..97]	[14..112]
SPT42_ARATH - Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1	9.0E-36	[5..89]	[17..102]
SPT4B_MOUSE - Transcription elongation factor SPT4-B OS=Mus musculus GN=Supt4h1b PE=2 SV=1	1.0E-35	[5..97]	[14..112]
spt-4 - status:Confirmed UniProt:Q9TZ93 protein_id:AAC68775.1	9.0E-33	[5..98]	[13..112]
gi\|19173491, gi\|... - gi\|19173491\|ref\|NP_597294.1\| TRANSCRIPTION INITIATION PROTEIN [Encephalitozoon cuniculi GB-M1], gi\|1... gi\|19173491 - gi\|19173491\|ref\|NP_597294.1\| TRANSCRIPTION INITIATION PROTEIN [Encephalitozoon cuniculi GB-M1]	1.0E-32	[5..93]	[14..103]
SPT4_SCHPO - Transcription elongation factor spt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt4 ... spt4 - transcription elongation factor complex subunit Spt4	8.0E-31	[5..102]	[10..105]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSERACMLC GIVQTTNEFN RDGCPNCQGI FEEAGVSTME CTSPSFEGLV GMCKPTKSWV  60
   61 AKWLSVDHSI AGMYAIKVDG RLPAEVVELL PHYKPRDGSQ VE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits