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View Structure Prediction Details

Protein: SPT4
Organism: Saccharomyces cerevisiae
Length: 102 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT4.

Description E-value Query
gi|112362888 - gi|112362888|emb|CAL35869.1| SPT4 protein [Saccharomyces paradoxus]
gi|151943343 - gi|151943343|gb|EDN61656.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae YJM789]
SPT4_YEAST - Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT...
SPT4 - Protein involved in the regulating Pol I and Pol II transcription, pre-mRNA processing, kinetochore ...
gi|190406914 - gi|190406914|gb|EDV10181.1| transcription elongation factor SPT4 [Saccharomyces cerevisiae RM11-1a]
1.0E-43 [1..102] [1..102]
SPT4_KLULA - Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1
SPT4_KLULA - Transcription elongation factor SPT4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079...
3.0E-43 [1..102] [1..102]
SPT4H_MACFA - Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1
gi|167773609 - gi|167773609|gb|ABZ92239.1| suppressor of Ty 4 homolog 1 (S. cerevisiae) [synthetic construct]
tr|G1U0W2|G1U0W2... - pep:novel chromosome:oryCun2:19:29917532:29924222:1 gene:ENSOCUG00000025823 transcript:ENSOCUT000000...
ENSCJAT00000033815 - null
SUPT4H1 - suppressor of Ty 4 homolog 1 (S. cerevisiae)
gi|73966584 - gi|73966584|ref|XP_853156.1| PREDICTED: similar to Transcription initiation protein SPT4 homolog 1 i...
gi|205361137, gi... - gi|62656744|ref|XP_213415.3| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensi...
SPT4H_BOVIN - Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1
gi|109114496 - gi|109114496|ref|XP_001106749.1| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB s...
gi|114669547, gi... - gi|114669549|ref|XP_001172699.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi|114...
SPT4A_MOUSE - Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1
gi|149723988 - gi|149723988|ref|XP_001503750.1| PREDICTED: similar to suppressor of Ty 4 homolog 1 [Equus caballus]
1.0E-36 [5..97] [14..112]
SPT42_ARATH - Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1
9.0E-36 [5..89] [17..102]
SPT4B_MOUSE - Transcription elongation factor SPT4-B OS=Mus musculus GN=Supt4h1b PE=2 SV=1
1.0E-35 [5..97] [14..112]
spt-4 - status:Confirmed UniProt:Q9TZ93 protein_id:AAC68775.1
9.0E-33 [5..98] [13..112]
gi|19173491, gi|... - gi|19173491|ref|NP_597294.1| TRANSCRIPTION INITIATION PROTEIN [Encephalitozoon cuniculi GB-M1], gi|1...
gi|19173491 - gi|19173491|ref|NP_597294.1| TRANSCRIPTION INITIATION PROTEIN [Encephalitozoon cuniculi GB-M1]
1.0E-32 [5..93] [14..103]
SPT4_SCHPO - Transcription elongation factor spt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt4 ...
spt4 - transcription elongation factor complex subunit Spt4
8.0E-31 [5..102] [10..105]


Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

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