Protein: | TFG2 |
Organism: | Saccharomyces cerevisiae |
Length: | 400 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFG2.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..400] | [1..400] |
|
1.0E-81 | [56..363] | [7..262] |
|
3.0E-55 | [163..356] | [59..253] |
|
4.0E-50 | [208..361] | [212..364] |
|
6.0E-48 | [208..361] | [212..376] |
|
9.0E-46 | [198..357] | [74..228] |
Region A: Residues: [1-194] |
1 11 21 31 41 51 | | | | | | 1 MSSGSAGAPA LSNNSTNSVA KEKSGNISGD EYLSQEEEVF DGNDIENNET KVYEESLDLD 60 61 LERSNRQVWL VRLPMFLAEK WRDRNNLHGQ ELGKIRINKD GSKITLLLNE NDNDSIPHEY 120 121 DLELTKKVVE NEYVFTEQNL KKYQQRKKEL EADPEKQRQA YLKKQEREEE LKKKQQQQKR 180 181 RNNRKKFNHR VMTD |
Detection Method: | |
Confidence: | 49.502279 |
Match: | 1f3uA_ |
Description: | TFIIF beta subunit, Rap30 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA polymerase II transcription factor activity | 4.06672086326535 | bayes_pls_golite062009 |
Region A: Residues: [195-269] |
1 11 21 31 41 51 | | | | | | 1 RDGRDRYIPY VKTIPKKTAI VGTVCHECQV MPSMNDPNYH KIVEQRRNIV KLNNKERITT 60 61 LDETVGVTMS HTGMS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [270-400] |
1 11 21 31 41 51 | | | | | | 1 MRSDNSNFLK VGREKAKSNI KSIRMPKKEI LDYLFKLFDE YDYWSLKGLK ERTRQPEAHL 60 61 KECLDKVATL VKKGPYAFKY TLRPEYKKLK EEERKATLGE LADEQTGSAG DNAQGDAEAD 120 121 LEDEIEMEDV V |
Detection Method: | |
Confidence: | 82.9794 |
Match: | 1bby__ |
Description: | DNA-binding domain from rap30 |
Matching Structure (courtesy of the PDB): |