| Protein: | TFG2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 400 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFG2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..400] | [1..400] |
|
|
1.0E-81 | [56..363] | [7..262] |
|
|
3.0E-55 | [163..356] | [59..253] |
|
|
4.0E-50 | [208..361] | [212..364] |
|
|
6.0E-48 | [208..361] | [212..376] |
|
|
9.0E-46 | [198..357] | [74..228] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MSSGSAGAPA LSNNSTNSVA KEKSGNISGD EYLSQEEEVF DGNDIENNET KVYEESLDLD 60
61 LERSNRQVWL VRLPMFLAEK WRDRNNLHGQ ELGKIRINKD GSKITLLLNE NDNDSIPHEY 120
121 DLELTKKVVE NEYVFTEQNL KKYQQRKKEL EADPEKQRQA YLKKQEREEE LKKKQQQQKR 180
181 RNNRKKFNHR VMTD
|
| Detection Method: |  |
| Confidence: | 49.502279 |
| Match: | 1f3uA_ |
| Description: | TFIIF beta subunit, Rap30 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA polymerase II transcription factor activity | 4.06672086326535 | bayes_pls_golite062009 |
|
Region A: Residues: [195-269] |
1 11 21 31 41 51
| | | | | |
1 RDGRDRYIPY VKTIPKKTAI VGTVCHECQV MPSMNDPNYH KIVEQRRNIV KLNNKERITT 60
61 LDETVGVTMS HTGMS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.540 | d.13.1 | HIT-like |
| View | Download | 0.781 | d.58.49 | YajQ-like |
| View | Download | 0.702 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.634 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.577 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.540 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.536 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.523 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.512 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.502 | d.58.49 | YajQ-like |
| View | Download | 0.495 | d.58.5 | GlnB-like |
| View | Download | 0.474 | d.58.17 | Metal-binding domain |
| View | Download | 0.470 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.469 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.462 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.447 | d.68.3 | SirA-like |
| View | Download | 0.419 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.417 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.402 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.400 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.384 | a.4.1 | Homeodomain-like |
| View | Download | 0.379 | a.39.1 | EF-hand |
| View | Download | 0.372 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.366 | d.68.7 | R3H domain |
| View | Download | 0.361 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.361 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.350 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.346 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.340 | a.64.1 | Saposin |
| View | Download | 0.338 | d.58.48 | MTH1187-like |
| View | Download | 0.334 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.325 | d.45.1 | ClpS-like |
| View | Download | 0.315 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.299 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.276 | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.271 | d.64.1 | eIF1-like |
| View | Download | 0.269 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.265 | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.259 | d.15.3 | MoaD/ThiS |
| View | Download | 0.252 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.249 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.248 | g.53.1 | TAZ domain |
| View | Download | 0.243 | d.26.1 | FKBP-like |
| View | Download | 0.237 | c.47.1 | Thioredoxin-like |
| View | Download | 0.234 | b.1.1 | Immunoglobulin |
| View | Download | 0.228 | g.7.1 | Snake toxin-like |
| View | Download | 0.227 | d.68.4 | YhbY-like |
| View | Download | 0.225 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.217 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.212 | d.230.3 | Amyloid beta a4 protein copper binding domain (domain 2) |
| View | Download | 0.211 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.208 | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.204 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.204 | d.95.2 | Homing endonucleases |
| View | Download | 0.203 | b.1.2 | Fibronectin type III |
| View | Download | 0.201 | d.58.18 | Regulatory domain in the aminoacid metabolism |
|
Region A: Residues: [270-400] |
1 11 21 31 41 51
| | | | | |
1 MRSDNSNFLK VGREKAKSNI KSIRMPKKEI LDYLFKLFDE YDYWSLKGLK ERTRQPEAHL 60
61 KECLDKVATL VKKGPYAFKY TLRPEYKKLK EEERKATLGE LADEQTGSAG DNAQGDAEAD 120
121 LEDEIEMEDV V
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| Detection Method: | |
| Confidence: | 82.9794 |
| Match: | 1bby__ |
| Description: | DNA-binding domain from rap30 |
Matching Structure (courtesy of the PDB): |
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