YRC Public Data Repository - Protein Structure Prediction

Protein:	DOC1
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DOC1.

Description	E-value	Query Range	Subject Range
gi\|1945308 - gi\|1945308\|emb\|CAA96958.1\| unnamed protein product [Saccharomyces cerevisiae]	2.0E-88	[78..283]	[1..206]
APC10_ARATH - Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=APC10 PE=1 SV=2	6.0E-69	[107..263]	[20..178]
gi\|5091606 - gi\|5091606\|gb\|AAD39595.1\|AC007858_9 10A19I.10 [Oryza sativa (japonica cultivar-group)]	7.0E-63	[107..264]	[29..188]
gi\|4836700 - gi\|4836700\|gb\|AAD30527.1\| anaphase promoting complex subunit 10 [Homo sapiens]	1.0E-59	[114..258]	[22..164]
gi\|85110707 - gi\|85110707\|ref\|XP_963592.1\| hypothetical protein ( (AL513409) related to anaphase promoting complex... gi\|12718366, gi\|... - gi\|32420809\|ref\|XP_330848.1\| hypothetical protein ( (AL513409) related to anaphase promoting complex...	2.0E-53	[114..254]	[184..326]
APC10_SCHPO - Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc1... apc10 - anaphase-promoting complex subunit Apc10	9.0E-52	[115..258]	[24..166]
CE05640 - WBGene00000144 locus:apc-10 Yeast hypothetical protein like status:Partially_confirmed TR:Q19487 pro...	3.0E-44	[107..255]	[15..158]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQNKRRLYK RKKVLNKLTT EGGKNNTRFR SQIMDPIGIN KVLDHLAPSE LIKPVKSCHN  60
   61 KPSVLVLDDR IVDAATKDLY VNGFQEEIQY QNPTPENLQH MFHQGIEILD SARMINVTHL 120
  121 ALWKPSSFKL GNPVDFALDD NYDTFWQSDG GQPHQLDIMF SKRMDICVMA IFFSMIADES 180
  181 YAPSLVKVYA GHSPSDARFY KMLEVRNVNG WVALRFLDNR EDDQLLKCQF IRLLFPVNHE 240
  241 NGKDTHLRGI RLYVPSNEPH QDTHEWAQTL PETNNVFQDA ILR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1387.39794
Match:	1gqpA_
Description:	APC10/DOC1 subunit of the anaphase-promoting complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits