| Protein: | IME4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 600 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IME4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..600] | [1..600] |
|
|
0.0 | [240..525] | [318..589] |
|
|
0.0 | [240..544] | [390..665] |
|
|
0.0 | [241..525] | [296..571] |
|
|
4.0E-93 | [241..544] | [418..727] |
|
|
7.0E-87 | [297..542] | [473..733] |
|
|
1.0E-65 | [301..513] | [156..384] |
|
Region A: Residues: [1-295] |
1 11 21 31 41 51
| | | | | |
1 MINDKLVHFL IQNYDDILRA PLSGQLKDVY SLYISGGYDD EMQKLRNDKD EVLQFEQFWN 60
61 DLQDIIFATP QSIQFDQNLL VADRPEKIVY LDVFSLKILY NKFHAFYYTL KSSSSSCEEK 120
121 VSSLTTKPEA DSEKDQLLGR LLGVLNWDVN VSNQGLPREQ LSNRLQNLLR EKPSSFQLAK 180
181 ERAKYTTEVI EYIPICSDYS HASLLSTSVY IVNNKIVSLQ WSKISACQEN HPGLIECIQS 240
241 KIHFIPNIKP QTDISLGDCS YLDTCHKLNT CRYIHYLQYI PSCLQERADR ETASE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [296-532] |
1 11 21 31 41 51
| | | | | |
1 NKRIRSNVSI PFYTLGNCSA HCIKKALPAQ WIRCDVRKFD FRVLGKFSVV IADPAWNIHM 60
61 NLPYGTCNDI ELLGLPLHEL QDEGIIFLWV TGRAIELGKE SLNNWGYNVI NEVSWIKTNQ 120
121 LGRTIVTGRT GHWLNHSKEH LLVGLKGNPK WINKHIDVDL IVSMTRETSR KPDELYGIAE 180
181 RLAGTHARKL EIFGRDHNTR PGWFTIGNQL TGNCIYEMDV ERKYQEFMKS KTGTSHT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| methyltransferase activity | 3.68431317301075 | bayes_pls_golite062009 |
| transferase activity, transferring one-carbon groups | 3.60853685152199 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 2.91374296950366 | bayes_pls_golite062009 |
| DNA-methyltransferase activity | 2.72106897862429 | bayes_pls_golite062009 |
| RNA methyltransferase activity | 2.63941856307703 | bayes_pls_golite062009 |
| N-methyltransferase activity | 2.62081022854657 | bayes_pls_golite062009 |
| protein methyltransferase activity | 2.60624413031692 | bayes_pls_golite062009 |
| transferase activity | 1.97261773840408 | bayes_pls_golite062009 |
| rRNA methyltransferase activity | 1.85380504590369 | bayes_pls_golite062009 |
| histone methyltransferase activity | 1.5770892133978 | bayes_pls_golite062009 |
| site-specific DNA-methyltransferase (adenine-specific) activity | 1.5743030926483 | bayes_pls_golite062009 |
| arginine N-methyltransferase activity | 1.17774160785818 | bayes_pls_golite062009 |
| protein-arginine N-methyltransferase activity | 1.17774160785818 | bayes_pls_golite062009 |
| catalytic activity | 1.16970557486814 | bayes_pls_golite062009 |
| tRNA methyltransferase activity | 0.752031224323003 | bayes_pls_golite062009 |
| binding | 0.749096536959959 | bayes_pls_golite062009 |
| histone-arginine N-methyltransferase activity | 0.663671542316122 | bayes_pls_golite062009 |
| DNA (cytosine-5-)-methyltransferase activity | 0.378599327496302 | bayes_pls_golite062009 |
| rRNA (uridine) methyltransferase activity | 0.283627597838594 | bayes_pls_golite062009 |
| protein-arginine omega-N monomethyltransferase activity | 0.24819970199694 | bayes_pls_golite062009 |
| RNA binding | 0.145125818301729 | bayes_pls_golite062009 |
| rRNA (adenine) methyltransferase activity | 0.113328595762489 | bayes_pls_golite062009 |
| protein-arginine omega-N symmetric methyltransferase activity | 0.0804008144859909 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0739385287924036 | bayes_pls_golite062009 |
| rRNA (adenine-N6,N6-)-dimethyltransferase activity | 0.0390774859535424 | bayes_pls_golite062009 |
| DNA binding | 0.029220083486074 | bayes_pls_golite062009 |
|
Region A: Residues: [533-600] |
1 11 21 31 41 51
| | | | | |
1 GTKKIDKKQP SKLQQQHQQQ YWNNMDMGSG KYYAEAKQNP MNQKHTPFES KQQQKQQFQT 60
61 LNNLYFAQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.675 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.537 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.616 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.693 | a.159.2 | FF domain |
| View | Download | 0.528 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.516 | a.64.1 | Saposin |
| View | Download | 0.499 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.468 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.442 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.420 | a.4.1 | Homeodomain-like |
| View | Download | 0.418 | a.159.2 | FF domain |
| View | Download | 0.370 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.368 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.360 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.336 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.335 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.320 | a.4.1 | Homeodomain-like |
| View | Download | 0.308 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.290 | a.39.1 | EF-hand |
| View | Download | 0.284 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.282 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.281 | a.159.2 | FF domain |
| View | Download | 0.274 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.272 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.264 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.260 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.249 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.245 | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.243 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.240 | a.3.1 | Cytochrome c |
| View | Download | 0.237 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.232 | d.58.5 | GlnB-like |
| View | Download | 0.221 | a.4.1 | Homeodomain-like |
| View | Download | 0.218 | a.1.2 | alpha-helical ferredoxin |
| View | Download | 0.212 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.210 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.209 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.206 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.206 | a.2.3 | Chaperone J-domain |
| View | Download | 0.204 | a.112.1 | Description not found. |
| View | Download | 0.202 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.201 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.200 | a.8.3 | Families 57/38 glycoside transferase middle domain |
